Gene detail

Detailed information of Bpl_scaf_23816-3.24 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_23816-3.24	DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 1	Bpl_scaf_23816	375390	417136	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_23816-3.24

ATGGAAGGAAATAAACCAGTACAAAATACACACGAAAAGCCAAAGAAAAAGAGATCACAAGGACACCAGCCAAAGAAAGAAAGTAAGAAGAAGGTGCAGGAGGGACAGTCTCAAAAACCAGGAAGTTTAATGCCAAATACTGTTCAGTATCATCCAGATGCTAACAGACTGGGACCAGATGGACAGGGACCCAGCCCAGTAAGGTTACATAATTTACCTCCAAAGAAAAGTCTATCACCATCCTTCATTGCAAGTCATGCAGCATCATTAGAAGGGGCTCCACAACAGATAGAACTCTCTCATACAGTCCAACATTTACCTACTACACATGGGAAGCAACAAATAAATATACCACAGGGTCAAAGTTCATCAGAAAGAATGCAATTTGCTCCTGATATTAGATTCATAGGACAAATGATGCCTAGAGGTCCACAACAATTAGGTCCTCAATCAAATGTTTATAGACAGTTTGCTCCTCAAGGATTAGATCAAGGAGGTTTATTACGTCAGCAATTATTACAGGGAGGAGTTAGATCAGGTTTTGATCCACCAAGATCAACCGCATCATATAACAGACCCGGTATAGATCCACCAAAATCAACTCCATCTTATCCTAGTCCACCACCAAACAGGACGGTCCACAACATACCTGGGGCATCTCCACCTAGTATTGACAGAGGGAGACCTAAAACAGACAGTGCAATGGAAAGTGACAGAACATCTCCATATCATGTGTCGACAATTCGTAAGACACCATCACCGGCTCCAAAGCACCGTGTATCTCCTGCACCGCCTCCGCAGTTATCTCCCCATTACAGACATGACATGGTGTCCCCTGTATCATCACAAGGAGAGAAGTTTGGGGTAAAACAGGACAGACCACAGTTAAATTTGGAAGAGACAATAAAATTAATACAGGGTCGCCCAGGGATCAACCTTCCACCACATTTATTGGCACAGTTTGCACAGCAATCAGTTAGATCTGAACAAGAAGAAGCTCTAAAGTCATATATGAGCAGATTTGATCCACCATACAGTTACTCTCCAATGCAGCCCTACCACAGGGCTCACTACAGACCAGAACCACAGGTAAAGGAACCAGCTCATAAGCCAGAGAGATCGACAAAACAATTTATAAGTACAATGTTAGCCAACCAAGCTAAGAGTCGTCACTCAGTACCGAGTAGTGTCATCCCCCAAGCGCTCACTGTGGATACTCGGCCAGAACATGTTGGTCCTCCACATTCTCAAATTGTTCAAGTTTCTCCAAGACAGGTGTCTCCCTCTAGTGTAGAAATGAGGCAGGTTTCCCCGTCTTCTGGAATGTTGAGACAGGTGACACCTGTTGGTGGAATGGCATCAACACAAATATACCACCCAGGAATTGCTGCCATCCCATCGTCAGTTTTACCAACATCTATCCCACAAACGGCACAAACGAGTACAGCATTATTACAGCCACAAGTCACAACATCATCTGAGGTAATCAGACGAGTTCCTTCTCCAAAACCTCAACATAGACATAAGGAATTTGCTCAGGCACAAATGCGTGCAAATCAAAATATTCATATACCTGAGAATGCTGGACCAATCAGGCAGCCTGTTATAGAACTAGTTAAACTGCCACTGATTAAATCTACTGATGGCAGACTTCCAACCTTTTCAGCCAGTCATATTACAAGTACATCTCATTTTATGAATAATCCTCAAGTATCTCAACCAGCAATGGTAAATCATGGTCTGAATCAGGTGCCATTCTCACAAGTGACACAATCACAGAGAGCTGTCGTTTCGACAGAAATAACAAAAACTTCTCAAGAAATAATTAATCCTTTTACATTTCCATCTAAACCTTCAGTGATGATATCACAACCAAAAAGTCAGCCACGATATGAAGTTATCTCCCCTGTTGTGCCACCAGTCAATGAAAGTAAAAGAAAGTTTTCAGATATTGAGATGCCACAGTTAGATCCTGTACCACCTCTGAAGAAAGAAAACAGTCCTGTCAAAGTGGAAATGGTTCCAATGAAAAGTCCATTTAATATGAGATTACAGAATTTAGCTAACCTTCCTACAAACTCTATGTACAGATCTACATATAGAGCACATAGTGTGGCAGTCCACAGAGCCAAGGCAGGATTGATTACAAGTACAGCAAAAACCTTAGATTTACTGCGACAAAACTTACAGAAATGTATAAACAAAGAAATAGATACCATTGTCAAGCAATATTTAGATAAATTTTTCAAACCTGGCATAGAGAATATTAAAACTAACAATGGAGAGAATTCAGTGACAGATGAACATGTACAAGCTGTGTGTAGACAAATTTTAGAAGAGGCCAAAAAAATGTACACTACTGAACAAATAAGTACTACACCAGTCAGAGATGAAAATACGCCTATTCCCTTCACTAGTAGAAAAAGAAATGCATCAGACACAGATTCAGAGAAAAGTGCATCTGTCCCAAGAAAGAAGAAAGGTCGACCACCAATATACACTTCTGGGAGATCAACTCCCTCCAAGCCAGCTAAAGCTAATGAACCTGTAAAGAGAGAGGGTCCTAAGTGGGATCCCAACAGATTAATTAGTACAACAAGATATATCATGGGAGCCAGAGCTAACAAGGCCCTTGGGTTAGGAGCAACGAGAGGAAGAATTTACATAAAACATCCTGATGTATTTAAATATTGTGGAGATCAGGATGATAAACAATGGTTATACGAGAACCATAAGATGCCAGCTACAGGTGGTAAAGCTTACATGATGCTTTTAGAAGATGTTAAAGACCTGGCTGAAGATGATGAATACAGAAATAATGCTAATGTAATGATGGCTGAAATCATTGGATTCACCATACCTGATTGGATGACAGAAAAGGTTAAAGTTCAGATGGAAGCTCTCAGAACTGACAAAGTCAAACAAAGGAGTCGATCAGCAACTCCTAATGGTGGACAACAAGGCACACAACCGGAAGTTAATGACACATACAAAGATTTACCATTCTCTAATTTTACCACATCAAAAGATTCTCCACAGCTTGAGAAAGATGACTTACAGGTAAGTTTATACAATTTTACCACACCAAAAGATTCTCCACAGCTTGAGAAAGATGACTTACGGGAGGATTTGAGGATGGACCTTCACCCTCTGCCTCAGATTTAG

Transcript

Bpl_scaf_23816-3.24

GCAGTGATTATTGCTATCTGGTTAGTCTTTATTCCTCCTGTAAAATTTCACAGTATTTTTCGTTATCATTTGAATCGACAGTTCATTAACAATTATAGTGACAGTCCACTGTAACAAATTGACACTTCTACTTCTACTTCTATACTGTTGATCTGCAGCGCGATAACACTACTTGCCAATCTGTTAGTAATGCTGCTAGTCTCTTGAAGCAGACCATATTCAGCACTAGTTCACCATTTACAGCATAACATTTTGTTTATGCAATATTATTAATTGAAACACTTCAAAATGGAAGGAAATAAACCAGTACAAAATACACACGAAAAGCCAAAGAAAAAGAGATCACAAGGACACCAGCCAAAGAAAGAAAGTAAGAAGAAGGTGCAGGAGGGACAGTCTCAAAAACCAGGAAGTTTAATGCCAAATACTGTTCAGTATCATCCAGATGCTAACAGACTGGGACCAGATGGACAGGGACCCAGCCCAGTAAGGTTACATAATTTACCTCCAAAGAAAAGTCTATCACCATCCTTCATTGCAAGTCATGCAGCATCATTAGAAGGGGCTCCACAACAGATAGAACTCTCTCATACAGTCCAACATTTACCTACTACACATGGGAAGCAACAAATAAATATACCACAGGGTCAAAGTTCATCAGAAAGAATGCAATTTGCTCCTGATATTAGATTCATAGGACAAATGATGCCTAGAGGTCCACAACAATTAGGTCCTCAATCAAATGTTTATAGACAGTTTGCTCCTCAAGGATTAGATCAAGGAGGTTTATTACGTCAGCAATTATTACAGGGAGGAGTTAGATCAGGTTTTGATCCACCAAGATCAACCGCATCATATAACAGACCCGGTATAGATCCACCAAAATCAACTCCATCTTATCCTAGTCCACCACCAAACAGGACGGTCCACAACATACCTGGGGCATCTCCACCTAGTATTGACAGAGGGAGACCTAAAACAGACAGTGCAATGGAAAGTGACAGAACATCTCCATATCATGTGTCGACAATTCGTAAGACACCATCACCGGCTCCAAAGCACCGTGTATCTCCTGCACCGCCTCCGCAGTTATCTCCCCATTACAGACATGACATGGTGTCCCCTGTATCATCACAAGGAGAGAAGTTTGGGGTAAAACAGGACAGACCACAGTTAAATTTGGAAGAGACAATAAAATTAATACAGGGTCGCCCAGGGATCAACCTTCCACCACATTTATTGGCACAGTTTGCACAGCAATCAGTTAGATCTGAACAAGAAGAAGCTCTAAAGTCATATATGAGCAGATTTGATCCACCATACAGTTACTCTCCAATGCAGCCCTACCACAGGGCTCACTACAGACCAGAACCACAGGTAAAGGAACCAGCTCATAAGCCAGAGAGATCGACAAAACAATTTATAAGTACAATGTTAGCCAACCAAGCTAAGAGTCGTCACTCAGTACCGAGTAGTGTCATCCCCCAAGCGCTCACTGTGGATACTCGGCCAGAACATGTTGGTCCTCCACATTCTCAAATTGTTCAAGTTTCTCCAAGACAGGTGTCTCCCTCTAGTGTAGAAATGAGGCAGGTTTCCCCGTCTTCTGGAATGTTGAGACAGGTGACACCTGTTGGTGGAATGGCATCAACACAAATATACCACCCAGGAATTGCTGCCATCCCATCGTCAGTTTTACCAACATCTATCCCACAAACGGCACAAACGAGTACAGCATTATTACAGCCACAAGTCACAACATCATCTGAGGTAATCAGACGAGTTCCTTCTCCAAAACCTCAACATAGACATAAGGAATTTGCTCAGGCACAAATGCGTGCAAATCAAAATATTCATATACCTGAGAATGCTGGACCAATCAGGCAGCCTGTTATAGAACTAGTTAAACTGCCACTGATTAAATCTACTGATGGCAGACTTCCAACCTTTTCAGCCAGTCATATTACAAGTACATCTCATTTTATGAATAATCCTCAAGTATCTCAACCAGCAATGGTAAATCATGGTCTGAATCAGGTGCCATTCTCACAAGTGACACAATCACAGAGAGCTGTCGTTTCGACAGAAATAACAAAAACTTCTCAAGAAATAATTAATCCTTTTACATTTCCATCTAAACCTTCAGTGATGATATCACAACCAAAAAGTCAGCCACGATATGAAGTTATCTCCCCTGTTGTGCCACCAGTCAATGAAAGTAAAAGAAAGTTTTCAGATATTGAGATGCCACAGTTAGATCCTGTACCACCTCTGAAGAAAGAAAACAGTCCTGTCAAAGTGGAAATGGTTCCAATGAAAAGTCCATTTAATATGAGATTACAGAATTTAGCTAACCTTCCTACAAACTCTATGTACAGATCTACATATAGAGCACATAGTGTGGCAGTCCACAGAGCCAAGGCAGGATTGATTACAAGTACAGCAAAAACCTTAGATTTACTGCGACAAAACTTACAGAAATGTATAAACAAAGAAATAGATACCATTGTCAAGCAATATTTAGATAAATTTTTCAAACCTGGCATAGAGAATATTAAAACTAACAATGGAGAGAATTCAGTGACAGATGAACATGTACAAGCTGTGTGTAGACAAATTTTAGAAGAGGCCAAAAAAATGTACACTACTGAACAAATAAGTACTACACCAGTCAGAGATGAAAATACGCCTATTCCCTTCACTAGTAGAAAAAGAAATGCATCAGACACAGATTCAGAGAAAAGTGCATCTGTCCCAAGAAAGAAGAAAGGTCGACCACCAATATACACTTCTGGGAGATCAACTCCCTCCAAGCCAGCTAAAGCTAATGAACCTGTAAAGAGAGAGGGTCCTAAGTGGGATCCCAACAGATTAATTAGTACAACAAGATATATCATGGGAGCCAGAGCTAACAAGGCCCTTGGGTTAGGAGCAACGAGAGGAAGAATTTACATAAAACATCCTGATGTATTTAAATATTGTGGAGATCAGGATGATAAACAATGGTTATACGAGAACCATAAGATGCCAGCTACAGGTGGTAAAGCTTACATGATGCTTTTAGAAGATGTTAAAGACCTGGCTGAAGATGATGAATACAGAAATAATGCTAATGTAATGATGGCTGAAATCATTGGATTCACCATACCTGATTGGATGACAGAAAAGGTTAAAGTTCAGATGGAAGCTCTCAGAACTGACAAAGTCAAACAAAGGAGTCGATCAGCAACTCCTAATGGTGGACAACAAGGCACACAACCGGAAGTTAATGACACATACAAAGATTTACCATTCTCTAATTTTACCACATCAAAAGATTCTCCACAGCTTGAGAAAGATGACTTACAGGTAAGTTTATACAATTTTACCACACCAAAAGATTCTCCACAGCTTGAGAAAGATGACTTACGGGAGGATTTGAGGATGGACCTTCACCCTCTGCCTCAGATTTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18192	DNTTIP1_dimer	DNTTIP1 dimerisation domain	Domain	Interproscan
PF21229	TdIF1_2nd	TdIF1, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026064	Family	Terminal deoxynucleotidyltransferase-interacting factor 1	Interproscan
IPR041384	Domain	DNTTIP1, dimerisation domain	Interproscan
IPR049121	Domain	TdIF1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23399	DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0031491	Molecular Function	nucleosome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_23816-3.24 global RNA-seq network