Gene detail

Detailed information of Bpl_scaf_23816-1.18 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_23816-1.18	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	Bpl_scaf_23816	127217	139394	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_23816-1.18

GCCTCGTTTTCGACAGGAACGCTTTCTTTCTCGCCATTTTCATCATTGATCACACGTCGACATAAGCGTAGAGCTCAAGATGTCTTATGGTAGACCAAACGATTCTAGAATTTATGTAGGCAATCTTCCACCAGATATCAGAGCCAGAGATATAGAAGATTTATTTTATAAATATGGTCGAATCAACTTTGTAGACTTGAAAACACGGCGTGGACCACCATTTGCCTTTGTTGAATTCGAAGACCCACGAGATGCTGAAGATGCAGTATTACAGAGAGATGGCTATAACTATGATGGTTACACGTTGAGAGTTGAATTCCCTCGAGGTGGTGGAGGAGGGGGACCTGATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGATACAGAGGGGGTGGAGGTGGTGGAGGTGGTCATGGATTTGGAGGAGGTAGAGGAAGAGGAGGTGGATTTGGTGGAGATCGTGGGGGTGGAGGAGGAGGAAGGGGTGGTCCACCCTCCAGGAGATCAGAGTACAGAGTCCTCGTTTCAGGTTTGCCTCCCTCTGGTAGTTGGCAAGATTTGAAGGACCACATGAGAGAAGCAGGAGATGTTTGTTATGCTGATGTATACAAAGATGGCACAGGAGTCGTGGAATTTTTGCGCAAAGAAGACATGAAATATGCAGTGAGAAAATTGGATGATTCAAAGTTTAGGTCACATGAGGGTGAAGTTTCATATGTCCGAGTGAAAGAAGATTACAGAGGAGGAAGATCTAGATCACGTAGTAGAAGCATGTCGCCACCACGTCGATCACGAGCATCACCACGGTACTCTCCACCTCCACGACAATCACGCTCATCTTCTAAATCCTAGGACTGCAGAAATTGGAAGTAAAGTGGACACATCCAAGGGACATAACCTCCTGAAGCTGGCAGCCATCTTGTATTAAGACAATGGTAAAATTAAAGAACGGAGGAGCTGGGATCCAGGCTCTAGGTTTGGACTGGATCTTGTATTCATATTTATGGATCACTATCTGGATTTGGAAGGGATATACAGGATCCGTCCTGGATACAATAGGATGTTCCCTTGAGTGCATTCTCATAAATACATGTAACCAATTACAAAATTTTAGCTAAATTTCTTTGGTTTTGGTTCTTTTTGAAAATTATTATTTGGTCACTACAAATGATGAGATACTTTTTAATTTCAAGAAATTTACATTTAATTTAAATTTAAGAATGTATATATGCAAAAAAAATTCATATAAATTCTTACAATGAGAATGCACGACAGATTTCTGGAACTGGAAAGGAACATCCTGAATCGAGGAATATCTGGCTTCTCTTTCTGAAATTTGAGAAAAATCACTGGACCCATCAGGAAATTACGTGGATAGGAAAACGCCCCTACATCCATAAGGATATGCTTATCTCCAAACATCCATATGGATCGGAAATCGCCCCGACATCAAGGATAATCTGGATTAAAAATTGGATCAGTCATATTTTTTTTGGGATCGTCTCTGGAAATCTTTGTATCTATCATGATAGGAAACTAAGTCATTTGGGATCATCTCTGACTGGAATTCTTCTGATCAGTCGTATTTAGGAAAAAAGTCATTTGGAGTTCAGGAAAATCTGGATAAATCATTTGGAATTTTACACTTTGGGAATTATTGCCCACCATAATTGAGAAAAGGAATAAAGGATCCCTGAATCAATTTGGAAAAGGATCATTAAAAGAAAGTATGGGAAAATGGATAGAAAAATGAGATCACTGACACGGAATCACTGGATTACAAGGGTAAAATCAATTTTTTTGAATATTCCTTTTCGAAATTAAGTGACCCAAAGTTTTTTAATTCCCCCCCCCCATAGTTTTGATTTTCCTTTCAATAAACTGTTTGATTAATTTCACTTTATTGTAATTAATATCTATTTTGTAGGAATTGAAAGTTAAATGAACATTATTGAGTATGGAAAAAATGAATTGATGAAATTTATCATAATTTTAATTGTGATTTTCAATAAAGAATGGTCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050374	Family	RRT5/SRSF/Splicing Factor SR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12890	SFRS1, ASF, SF2; splicing factor, arginine/serine-rich 1	-	Spliceosome	ko03040	PMID: 28812709
			IL-17 signaling pathway	ko04657	PMID: 28812709
			Herpes simplex infection	ko05168	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_23816-1.18 global RNA-seq network