Gene detail

Detailed information of Bpl_scaf_23638-1.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_23638-1.8	PULMONARY SURFACTANT-ASSOCIATED PROTEIN A	Bpl_scaf_23638	170665	209585	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_23638-1.8

ATGTATTTGTCTTGCTCCCAGCTTGTATTTCTGTTTGGATGTATTCTGTCATTTATGACAGCAGCTGCTGAGCATAATAATGAAAAACGACTACTTTTAAATGATCCTGATATCACTGGACGACGATTGGCCCATTTGGAAAGTACACAACAAGAACTAACAAAATTACTTGCTAGATGTAATGCTACTATCGCAGCCTTGCAGGCAAAGAATGCGGCTGTTGAGACAACGAATTCAGATTTACAAAGCAAATATACTGCCTTACAGTCGAGAACGATGCAGTTAGAAAGTCACACAGTAAAACAGGACAAAATGATAGCAACACTCCAAGGCTACGCCGCCGGGCAACGATATTATCATTTGGCTGCCAGTGATCATTATGGTGGTCCAGCCAACACACTATGTCTCCCAAACAATCCAGAACTAGACCTTTCACACACAATGTACCCCAATAATGAACTTTACGGTACTGAATATGAAGGAAATGATTTTGGTACTAATTCTGCGAATGAGGACATGCCTTGTGCTGTATGTAGAATAAACAGTTTATCCACTACTATTATGATTCCCGGGAGAAAATCTTGTTACCCGGGATGGAGGGTAGAATATAATGGGCGTCTAGCGGGCGGTGATCATCGCTATAGTGCATCATCTTATCTGTGCGTGGACAAGAATCCGGAATACATCCCGTCTGGACAGAAAAATGAAAATGGACATCTTATTTACGTCATTTCGTTTAAATGTGGACCTCTTCCTTGTCCACCATATAAAGATAACACCGTAGCTATGGCTGTGATGAAACATCCTCCTGGTCAGCTTTTTCTGGATGTTCCGCATCTTGTGGTGGTGGATGAAAGACTTTTAAAAGATCTTGACGGAGGTTGGGCTACATGTGAGGAATGGTATGCATGTCCAGTGACATGTGGAACAGGCACCCAGTATAGATATAGAGATTGCAGCAATCCTTTAGTTTATTGTGATGGTGCTGATTGTCCGAACTGTGATGGGTCATACTGTAGTCAGAGTATACAAAGAGACACAGATACAAATACATATAACGACTTTGCCTGCAATGAATGTGGAAATCGTGAGATTGGTTTTGGAAGCCCATCATCATATACAGCAATAACCGGGTCAGAAAATGGATATGGTATATTAGCCGAAAGTGGATTTGATGAGGCAACTTGCTGTGGGGTAATAAAATATTGGGAGTTTTATGCCTCCAGAGCAGGAGAACTCCATCTAGTGGTGTGGCGAAAATCAAGAACTATTTACACTTTGGCGGGTAAAAATGTGTATATAGTTCCAAATATCAATGACAAGCCTGTTATCAGTAATTTACCGTTGCCTTATCCTTTCCTAATAGAAGAAAACTCAGCAGTAGGTACAACACTTTACCATGTCAGAGTTCGTGACCTTGACACTGCTGACACACATTTGATATATGGAGCATTTACTTCTACCACAGGATCGTCATATTTTAGTTTAACCGCAGACGGTACTTTCAAAATATCATCTGCTCTGGACTTTGAAGATATGACAAGTAAATCTTATAAAATAGTAGTAACAGCAACGGATGGTAAGGATACAGCCACAGCAACTATATCACTTACTGTTACAGATCAGAATGAGACCCCCGTGTTTCACCAGACAGAATATTCTGTTGGGCAGGATGAATCTTCGCAACATGCCACGTTCCCGTCTGCAGGGTTTGTTTTCACCGACCCTGATGAGGGCGATTCTATCACATATTGGCTTGACTGCGGCAACGACACCTGGAGGTTTACAATGGCGAATACATCAGGGGAAATAACTTGCGCATACGACTATGACCTCGATAAAATTTTGACAACTCAATATAATTGTATTGAGAACACAACAACGGCATCTACCACTCCTATACCGGTAACATTTCTCAACAGTCCTACTAATTCTCTTTGGTTTACAGCGCTTGGTATGTTGGCTGTGGGTACGACAATTGGAATATTGTACTTCTGTGTTAGATATTGGCATTCTATTAACTGCGTAAAAATGACACCTAAATTAGATGACAAAGGAAAGAATGAAAACAAAGTAGATACAGATGCTTCAAATCCATCGAAAACTAATAAAATGAAAAGCATTGACACTCAAAGACCGCCTGGTAATCCTATATTTGATAAGAAAAAGGGACGCAACTCAGTAAACAGGTCAACAGATTCATTTTTCAAAATTGTAAACAATAGTATGTGTTCCAGCTCCATAGACACAACCGCGTCATCATCATCTGTAGATAAAAACAATGAAGATGATTCAAAGCGAAATAGTGTATCGGCCAATGTGTTCAGGAATAGCAGTAGTAACTTATACAAGTCGTCTCTTGATATATAA

Transcript

Bpl_scaf_23638-1.8

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR051077	Family	Calcium-dependent Lectin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24024	PULMONARY SURFACTANT-ASSOCIATED PROTEIN A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_23638-1.8 global RNA-seq network