Gene detail

Detailed information of Bpl_scaf_22825-2.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_22825-2.6	RNA-BINDING MOTIF PROTEIN 14B	Bpl_scaf_22825	238740	281187	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_22825-2.6

ATGGAAGATAGAAAAAGCAAAACGTTATTCGTTAGAAATTTACCGTTTACCACGAATAACGATGCTTTAGAAAAAGTATTTAGCGAAATAGGTCCATTGAAGCAATGTTTTGTTGTAAAAAACAAAGATGATGACAAATGTAAAGGTTATGGATATGTGACCTATTCTCTGCTAGAGGATGCTGAGAAAGCTAAAAAACAAATTGAATACCTAGATAGCAGGAAGTTATTTATAAATTATGCTAACAAGAAAAAAGATACAAAGATAAAAAAATCTTTATCACATAAAGTAATACAGGATAACACGAAGACAGGAGAACACGATGTTACTCAGGATAGCATAAAGACAGAAGAAAAGATAGCAGGAAAAAGTCATGATGTAAAGAAAGAAGAAATATCTTATTTAAAGGCTAAATCATTATTAGTGACAGGATTTACAGAGGAAGACAAAGTGCAGACAACTCTAGATAAATTAAGTATTAAGAATATCTCCAAAACAGAATTCCCAGTAAAAGGAAGAGATCAACTGACAGTATTTATGAGGTTCAAGTCAATCAGAGATTTAAAGAAAGGACAGAAAATATTAGAGAGCAAAGGTTTACATGCAGTTCAGTTATCTAAAGAAAACAAGATCATTCCACAGAAATTGTTAAAACAAGCTAGACTCATTATCAGAAACTTGTCTTTCCAGTGTACCCAGTCACATCTACATGAAATCTTCAGCAAGTATGGTGAAGTATCAGAAGTGAAAATACCAAAAAAACCTGATGGTAAGCTGTGTGGCTTTGGATTTGTTCAGTTCTTATTGGTATCATCTGCTGAAAGAGCTCTGAAGGAAATGAATTCCAGGATGATAAGAGGTCGCACTGTAGCAGTAGATTGGGCCGTACCTAAGAGGAAATTTGAGAAAAATAATCAGACATATAAAGATGGTAGTAGTGAAGAAGAAGATGAATCAGAAGACGAAGAAAGTGATAATGAAAAGTCAGAAGAATCTGATGATGAATTGTCAGATGACTCATCGTCTAGTACTGACTCTGAACACAGCAGTGATGAGGACAATGATAAATCATTAGATGATTCCACAGATGAAGGGTTCGATGAATCAAATGATATTAAGTCAAAACAGAAGAAAGAAATGCCAGTAGACAATAAAGTAGAAGATGGTCGTACACTGTTTATCAGAAATTTGTCATATGAAACAGAAGAGGACACATTATCAGATGTTATGTCAGAATTTGGACATGTTAATTATTGTAGGATTGTTGTTGATCCAAAAACTGAACATTCTAAAGGTTCTGGTTTTGTACAGTTCAGGAACGTACAAGCTGCTGATGCCTGTTTACACAAATCTGATGATGAGGGACCAGGTATTATAGTAGATGGACGTAAGCTGTTTATAACTAAAGCAGTCAGTAGACAGAAAGCTACAGAATTAAAAAAGAAAGAAGAGAAAACTAAAGAAGATAAAAGAAATGTACATCTTGTCCGTGAGGGATTAATAAGACAAGGCACTAAAGATGCTGAAGGCCTTACTAAAGAAGATCTTATTAAAAGAAATAAGATAGAAGATGTGAAAAGACAAAGATTAAAAAATCCTAACATCTTTGTATCAACGACCAGATTATGTGTTCATAACTTACCTACATCTATGGATGAAAAAGAATTAAAGAAGATCTTCCTTACTGCTGCTGGTAATAAAGCTAGAATTACTGAGTGTCGTATCATGAGAGATAAAGATAGAGTAAATACTAAAGGTATAGCTAAGTCTCGTGGATACGCCTTTATCAACTTTACAGATCATCATCATGCTATACAAGGTCTAAAGAATACCAATAATAACCTTAGTCTGTTTAATGATGGAAGGCGGTTGATAGTGGAATTTTCATTAGAAAATAAGAATGCCCTTTTGGCTAAAGAGAAGAGACTAGAAAGATTTCAGACGAGACAAAAACAGCTGAAGCAGGAGTTTGTAGGAGGAACGAACAAGAGAGATGATAAAGACATTAAGAAGAATAAACAAATGAATAAAGACAAACAAAAAGATAAAATAACTGAGAGATACATCGGCAATGTCAAGTTACCTGCAGGACAGAGTAACAAGAATGTGATGCCATCTCACTGGGGGCCAAAAATCAGACATAAACCTAGACCACAGAAGGGTCCACAACAGCCAGGACGGAAACAGTGTGGACCAATACCAGAAAAACGCAAGAAACAGTTTGATCAGACTCCAGTTAAACAGAAAAGAAGAAAGAAATCAGAGACAGTTGATAGTTTTGACAATCTTGTAAATTCTTATAAAAAGAAAATAATGTCTTCGAAGTCTACATCAAAGTGGTTTGACAATTAA

Transcript

Bpl_scaf_22825-2.6

CAGGTTTTTAAGAAGAAGCATGGAAGATAGAAAAAGCAAAACGTTATTCGTTAGAAATTTACCGTTTACCACGAATAACGATGCTTTAGAAAAAGTATTTAGCGAAATAGGTCCATTGAAGCAATGTTTTGTTGTAAAAAACAAAGATGATGACAAATGTAAAGGTTATGGATATGTGACCTATTCTCTGCTAGAGGATGCTGAGAAAGCTAAAAAACAAATTGAATACCTAGATAGCAGGAAGTTATTTATAAATTATGCTAACAAGAAAAAAGATACAAAGATAAAAAAATCTTTATCACATAAAGTAATACAGGATAACACGAAGACAGGAGAACACGATGTTACTCAGGATAGCATAAAGACAGAAGAAAAGATAGCAGGAAAAAGTCATGATGTAAAGAAAGAAGAAATATCTTATTTAAAGGCTAAATCATTATTAGTGACAGGATTTACAGAGGAAGACAAAGTGCAGACAACTCTAGATAAATTAAGTATTAAGAATATCTCCAAAACAGAATTCCCAGTAAAAGGAAGAGATCAACTGACAGTATTTATGAGGTTCAAGTCAATCAGAGATTTAAAGAAAGGACAGAAAATATTAGAGAGCAAAGGTTTACATGCAGTTCAGTTATCTAAAGAAAACAAGATCATTCCACAGAAATTGTTAAAACAAGCTAGACTCATTATCAGAAACTTGTCTTTCCAGTGTACCCAGTCACATCTACATGAAATCTTCAGCAAGTATGGTGAAGTATCAGAAGTGAAAATACCAAAAAAACCTGATGGTAAGCTGTGTGGCTTTGGATTTGTTCAGTTCTTATTGGTATCATCTGCTGAAAGAGCTCTGAAGGAAATGAATTCCAGGATGATAAGAGGTCGCACTGTAGCAGTAGATTGGGCCGTACCTAAGAGGAAATTTGAGAAAAATAATCAGACATATAAAGATGGTAGTAGTGAAGAAGAAGATGAATCAGAAGACGAAGAAAGTGATAATGAAAAGTCAGAAGAATCTGATGATGAATTGTCAGATGACTCATCGTCTAGTACTGACTCTGAACACAGCAGTGATGAGGACAATGATAAATCATTAGATGATTCCACAGATGAAGGGTTCGATGAATCAAATGATATTAAGTCAAAACAGAAGAAAGAAATGCCAGTAGACAATAAAGTAGAAGATGGTCGTACACTGTTTATCAGAAATTTGTCATATGAAACAGAAGAGGACACATTATCAGATGTTATGTCAGAATTTGGACATGTTAATTATTGTAGGATTGTTGTTGATCCAAAAACTGAACATTCTAAAGGTTCTGGTTTTGTACAGTTCAGGAACGTACAAGCTGCTGATGCCTGTTTACACAAATCTGATGATGAGGGACCAGGTATTATAGTAGATGGACGTAAGCTGTTTATAACTAAAGCAGTCAGTAGACAGAAAGCTACAGAATTAAAAAAGAAAGAAGAGAAAACTAAAGAAGATAAAAGAAATGTACATCTTGTCCGTGAGGGATTAATAAGACAAGGCACTAAAGATGCTGAAGGCCTTACTAAAGAAGATCTTATTAAAAGAAATAAGATAGAAGATGTGAAAAGACAAAGATTAAAAAATCCTAACATCTTTGTATCAACGACCAGATTATGTGTTCATAACTTACCTACATCTATGGATGAAAAAGAATTAAAGAAGATCTTCCTTACTGCTGCTGGTAATAAAGCTAGAATTACTGAGTGTCGTATCATGAGAGATAAAGATAGAGTAAATACTAAAGGTATAGCTAAGTCTCGTGGATACGCCTTTATCAACTTTACAGATCATCATCATGCTATACAAGGTCTAAAGAATACCAATAATAACCTTAGTCTGTTTAATGATGGAAGGCGGTTGATAGTGGAATTTTCATTAGAAAATAAGAATGCCCTTTTGGCTAAAGAGAAGAGACTAGAAAGATTTCAGACGAGACAAAAACAGCTGAAGCAGGAGTTTGTAGGAGGAACGAACAAGAGAGATGATAAAGACATTAAGAAGAATAAACAAATGAATAAAGACAAACAAAAAGATAAAATAACTGAGAGATACATCGGCAATGTCAAGTTACCTGCAGGACAGAGTAACAAGAATGTGATGCCATCTCACTGGGGGCCAAAAATCAGACATAAACCTAGACCACAGAAGGGTCCACAACAGCCAGGACGGAAACAGTGTGGACCAATACCAGAAAAACGCAAGAAACAGTTTGATCAGACTCCAGTTAAACAGAAAAGAAGAAAGAAATCAGAGACAGTTGATAGTTTTGACAATCTTGTAAATTCTTATAAAAAGAAAATAATGTCTTCGAAGTCTACATCAAAGTGGTTTGACAATTAATTGAATTCTGTGATTGATCATATACTGCTTCTATTTAAGAAGTCAAGTTGTATTGACTGGATACATTTGTATATTTTGTGTACAAGTTATAACTTGTACAACACAAAAATACAAGCTAAAACTTGTACAAATTTGACCTATGCAAGTTATAACAAAATTTCTCCCATTATTACGGCCTTTTAACCCCGCTGAACCAGTGGTGGAAAAATCTGTAATCCTCTAGAGGATTAAAATGTCTCGTGCCTTTCCCCGCATTAATTTCAAATGCATTAATTTCAAATTTTGAAATAAAGTTCGTGTTAAATAATGGGAGATACAAATTCTCCTTCAGTTGCCTATGTGGGTTACGATATTTCTCCACTCTCGAGAGTTAAATTAAAAATTTTAACCACTCGCCTCACGGCTTGTGGTTAAAATTTTTAATTTAACTCTCTTGAGTGGAGAAATATCGTAACCCACGGGCAACTGAAGGAGAATCTATATATATATACGGTTACTGAGTAAAGTTATAGCTTTCTGGTGCCTTATTATAGAGTGACTGTAAGTAAACATATTCTAATAACTCCTTTGGTATCTTCTAACTCTTCTAACATTGTAAGTGCGGACATAGTAGAGGAAGCCATTGAAATCAATTAGAAGCAAAGTTATGTCTGTTTTTTTTCACAAAATTTTGCTTTTTTTTTTTTTTTTTTTTGACATTGAAGGTTAAACGCAATATACGTACATTGTTGATAAATATTACATTTTGTGGGGCGCTTGCTTCAAAACAGGTCAGAATAGCTGACAATATACTTATATTGTTTATTTAATGTGATTTATATTGAATTAATTACATGAATTATTTTAGATTTAGTGTAATAATTACTATTGAAGCGTTATAATGACCATGACTTTATTACACAGACTTTAATATGATGTTATAAGACATGTACAGATGAGTATGAGTACAGTATGAATTACAGAATTACATTATGAATCTACCATGGGAGGTTTACTATGTCACACGCACGGATACTTGAACATCGGCTCAAGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR051945	Family	RRM MRD1 RNA Processing and Ribosome Biogenesis	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48039	RNA-BINDING MOTIF PROTEIN 14B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14573	NOP4, RBM28; nucleolar protein 4	-	Ribosome biogenesis in eukaryotes	ko03008	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_22825-2.6 global RNA-seq network