Gene detail

Detailed information of Bpl_scaf_22762-2.15 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_22762-2.15	BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE	Bpl_scaf_22762	231007	245542	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_22762-2.15

GAATATTCTCCCAACTTAGTAACGATTATTTTTCACATAATTATCAATAGTCGACAGGTAAAATCCTGTTCTTACGAATGTGTATAAATAACGACTGGTTTCCTAAACCTGTGACAGTCAGCAATTGTATCTCAAAATGGGCAGACCTAAAAGGAAGGCAGCAACTGATTCTGAAGTGAAGGCAAAACGAGCAAAAGGTGAAACAGATCTTGTAGGGGACCTAAAATGGACACAGTTTGGAGATGTCATCAAGGGATTTTGTCCTTTGCTGAAATTAACTTCCGAAACATTACCAGGATCAGATAAAATCGCAGGATTTGATATAGATTTCACTGTTATAAAGACTGCTAGTGGAAGAAGATTTGCTACAGGTTCAAACGATTGGGAATTTTGGGATGAAAGTGTTCCTTCTAAACTTAAGGAACTTTACAATGATGACTATAGAGTCGTTTTCTTTACTAACCAAGCTGGAATAGAGAAACTCAAAGTTACACCAGAAGTATTCATGAAAAAAACTGAAGATATTATCAAAGAAATTGGAGTACCTATCTATTGTTTTGCATGTACAGGCACCAACCATTTTAGAAAACCAAGCACCATGATGTGGGAGAATCTTGTTGAACACAGTAATAAAGGAGTCAAGCCAGATATGTCAAAGTGTTTATATGTAGGAGATGCTGCTGGGAGAGCTAAAGAATGGGCTCCTGGAAAACCCAAAGATTTCTCATGTAGTGATAGAATGTTTGCAGCAAATCTGGGCATTGATTTTTATACACCAGAAGAATTTTTCCTCAAGGAAGCTGCAGCACCTTTTGATTGGCGATCTATGGATCCTGAAATGTTTTTATCAAAGGCAAAGAAACCAGTGCCAGCCCAGTATTCCTCTATGAATCAAGAACTTGTAGTAATATGTGGGTGTCCAGCATCAGGGAAAAGTACATTCAGAAGACGTTATTTTGAGAAGCATGGTTATGTAGTTGTTAATAGGGATACAATGGGCACCATGGATAAATGTGTTAAGGCTGCTAAAGAAGCAATAAAGAATGGTAAAAGTGTTGTATCAGACAATACAAATCCATCTGTAGCTGCTAGGAAAGATTTTATACAAATTGCCACGAAAGCAGGTGTTCCCTGTAGATGTTTTATAATGAAGACTCCACTAGAACTTGCTCATCATTTAAATCTTGTACGACAGAACCAAACAAAGGGACAAGTCCGTAGAATACCTGATGTTGGCTATCATGTATATAAGAAGAATTTTGAAACTCCCACCAAAACAGAAGGATTTTCTGAAATCGTTGATGTTGATTTTGTTCCTAAGTTCGACAGCAGTTCAGATGAAAGACTGTTCAAACAATGGACAGATTCTACATAATTGACAAAAACATTACATTCCATAATAAATAATGTGTTCTTCAGTCAAACATCAATATAAACAATTTACTCTTGTCTGATTTTGTAACATGGTAATAATATGCAGATTTAACAAATTAATGATGACTTGTTTTTATAATATATTTATCTGTGCCATTACATTTTTGACTTCATTATCAAAATTTGTACTGTTGTTTATTTTTATACCATATTTGTTTTTATAGATTATTATATTTTTTGACATTGTCAATATTACAGATTTAATTTTCTGTTATATTTCCATTACATTTGTATTTGTTGTGACCTTTTTAGCAGAGCTCACATATAATGATTACCATTGGTCATCCATGTTGTCTTGCCATCCTAACTGCTTCTACAATACTTGATTAAGCCAAACTTTTATCACTTCACATTTTATGTTCCATAGAATAAATCTGTTTAATAGGATTCCAGATACATATATAGTAAAAGCATTTTTTCTATCTATATTTTTGTATCAAGTAAAAACTAAAGGCTCATAGTTGGATTTCTTGTCTGGACTTGAATTTCTTTCATCTCCGAGTCCACACAATTTTGTTTTCAAAATAACTCGGGGACTAACGACAATGAGTGATATTGCAGCTTTTTTTTAGGGAGCTAGGAGAGAAAATATTTGTTCAAAAGAATCCCCCCTCCCACTTTTCATAGATAAGAAAATGGTTGGCTCATATTGGTTTTATAGTTGAAATTGTGAATATACTCAGTCTGTAGAGTATAATTTTGATCCTGGTTGTTATATTTTATATGCTTAGACACAAATTATATTGCATTTTAGTTTTTATGAATTGTTATTTCAATTATTTTAATAAAACATTTTTAGCCAGTGTTATCTTTGATTTTCCTTGCAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08645	PNK3P	Polynucleotide kinase 3 phosphatase	Family	Interproscan
PF13671	AAA_33	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006549	Domain	HAD-superfamily hydrolase,subfamily IIIA	Interproscan
IPR006551	Domain	Polynucleotide 3'-phosphatase	Interproscan
IPR013954	Family	Polynucleotide kinase 3 phosphatase	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12083	BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0046403	Molecular Function	polynucleotide 3'-phosphatase activity	Interproscan
GO:0046404	Molecular Function	ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity	Interproscan
GO:0046939	Biological Process	obsolete nucleotide phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08073	PNKP; bifunctional polynucleotide phosphatase/kinase	EC:3.1.3.32 EC:2.7.1.78	Base excision repair	ko03410	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_22762-2.15 global RNA-seq network