Detailed information of Bpl_scaf_22647-0.7 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_22647-0.7SPLICING FACTOR 3B SUBUNIT 4Bpl_scaf_22647623222223+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000504DomainRNA recognition motif domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR034158DomainSF3B4, RNA recognition motif 1Interproscan
IPR034159DomainSF3B4, RNA recognition motif 2Interproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR052084FamilySpliceosome-associated SF3B4 subunitInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR48030SPLICING FACTOR 3B SUBUNIT 4Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0005689Cellular ComponentU12-type spliceosomal complexInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0048026Biological Processpositive regulation of mRNA splicing, via spliceosomeInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12831SF3B4, SAP49; splicing factor 3B subunit 4-Spliceosome ko03040PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_22647-0.7 global RNA-seq network
TOP