Gene detail

Detailed information of Bpl_scaf_22631-2.15 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_22631-2.15	DNA REPAIR PROTEIN RAD9	Bpl_scaf_22631	244138	268864	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_22631-2.15

AAAAATTCCGCGAACATCAACAATATTTATTTTTTCTACAGACTTGAAATAACTTAAAATTGGTCTTATTAGATTTATAGCTTAGTTGTAATTGATGGAGACAAAATAATGCCCTGACGTTAAAATGAAATGTGTTATTCCTGGAATAAACATAAAAGTTTTTGGAAGAGCAGTTCATTCTTTGTCAAAGATTGGAGATGAAATTTATATTGAACCACAGGAACAAGGGCTAGCTTTAAGGACCGTAAACTCGTCAAGGTCAGCATACGGTTGTTTCATGTTTTCTCCAACATTTTTCCAACACTATGATGACGGATCCGGACAGATAAGAACAGATGATAGTGAAGAAGATCCTGTCAGGTGTAAAGTAGCCATGAAATCCTGCCTAACGGTATTTAAATCCATGTCGACAATAGAAAAGACAGTGGAAAGATGTAAAATAAAACTAAACATGACTGAATGTAGACTGGTATTTCAACTATATTGTAAACATGGAATTGTGAAGACCCATAACCTAGCTTTCATTGAGTGTGAAACATTGCAAGCTGTTTTCTCAAAAGACATGAGCCCTAATAGACTCACAGCTCAGGCTAAATTGCTTGCTGATGCAGTAGTTAATTTCCAGACAAACCAAGAGGAGATAACCCTGTTAATTACTCCAGAAAAGATTTCATTGAAGAATTATGTGGATGATGAACCAGATCCCAATAAAGTAATGCACACAATGGTACATTTAGACCCAGATGAGTTTGATAACTGTCAAGTTGGTGTAGATACAGATATCACTTTCTGTTTAAAGGAACTTAGGGCAATACTGGGATTTGCAGAAGCTTTGAATATGCCTATAAATATTAATTTTGAAAGTGCAGGAAGACCGGTGATATTTGGAATCAACAGTGATACAGCATTTGAAGCAAACCTGGTTCTAGCCACCCTGGCTGATTCACAGACACAGACAAACTGTTCACAGCAATCATCTACATCTGTCAAGGCTAAATCAAGCCAGCAGGTTAGATCATCTCGTGGAGCTGGCAGTAGAATGAAGACTTCAGACAGGGGAGATAATAACAGTACCACCAATGAAGTTGACAACAGAGTAGACAGGACTAGTAAATCAGACAGAAGTGAAAGATTAGAGGCAGCTTATGATGCTATGCTTGATGATGACTTTGATGATGAATTGATGATTTCAGACATGCCAACAATGAATAGCAAAACTAATTCTAAAAATAAACATGATGCAACTACTGTGACTTCAAATAGTGGTGATACAAGATTTCAAAATATCTCAAATATGACTGAGAAAACATTTGCTCCAAATACTGGTGATCATGCAATTGAAAGAGAGGAAACAGATAAAAGAAAAAGAACATTATTTAATGTAAAAAGGGATGTAGATGATTTTGGGAGAAGGTCCCCACAGCCATCTACTTCTCGTGTTACAGGATGGTTAAATAAGTCAACACATATGGTTCCAGATAAAGACAGTCAGGAATCTCAGAGTCCAGTCGTGCCAAATCAATCTAAGCCTCTGAATACTAGTGCCATAGATACAACCTTACATGAGGAAGATGATGAGGAGGACATTGTTCCTGGTACACCTCCTAGTAAAAAGTTTCGATCATTGTTTTTTGGCATGTCACAAGCCAGCACAAATTCTCAAGTATCACAGCCAAAAAAATCCAAGCCGGTGGTACTGGTAGAAGATTCAGACGAAGATTGACAGAAATCAGTTTAAATATGGAGAAAACTTCATTTTAAATGCGATTATGGATACTGTTTAATTGTTATCATGTTATTTTATGTATAGACAATAAAATGGAGAAAACAAACATTGCTTGATTGTTATGCTAGAATTACATTGATTTGATGAACTAGTCAGTACACTACCTAGGACCTGAATACTGTGAAAGTACTTTTATTTGTTGGCACCAATTTTCATGGTTTCTACAAAATGCATTGATGTTCTTGAATTCGTGGTTTCAAGTAGTACATGCCACAATCAATTGGAAAATTGTATTTCATTGGATTTTAATTTTCATGGTTTAAGGGAACCACGAAATCAGCGAAATTAGAAGCGCAATAGTAATGATTTCATGTAGTACAGAGCAATGCTTTAAAAAGATGAAAATTTGACACAAAATTACACTTGTTTAAACTCTGAACCCTGAAATTTAGAACGAATACATTCTGTTTTATTCTACATCATTATAGTGGGGAGTGATTTTTGCTTGTTGAATGCCAGGTGAGCATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04139	Rad9	Rad9	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007268	Family	Rad9/Ddc1	Interproscan
IPR046938	Homologous_superfamily	DNA clamp superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15237	DNA REPAIR PROTEIN RAD9	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000076	Biological Process	DNA replication checkpoint signaling	Interproscan
GO:0000077	Biological Process	DNA damage checkpoint signaling	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0030896	Cellular Component	checkpoint clamp complex	Interproscan
GO:0031573	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0071479	Biological Process	cellular response to ionizing radiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10994	RAD9A; cell cycle checkpoint control protein RAD9A	EC:3.1.11.2	Cellular senescence	ko04218	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_22631-2.15 global RNA-seq network