| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_22089-0.17 | SYNDECAN | Bpl_scaf_22089 | 89918 | 114555 | + |
| CDS | |||||
| Bpl_scaf_22089-0.17 | |||||
| Transcript |
| Bpl_scaf_22089-0.17 |
| Protein |
| Bpl_scaf_22089-0.17 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00086 | Thyroglobulin_1 | Thyroglobulin type-1 repeat | Domain | Interproscan |
| PF01034 | Syndecan | Syndecan domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000716 | Domain | Thyroglobulin type-1 | Interproscan |
| IPR001050 | Family | Syndecan | Interproscan |
| IPR027789 | Domain | Syndecan/Neurexin domain | Interproscan |
| IPR030479 | Conserved_site | Syndecan, conserved site | Interproscan |
| IPR036857 | Homologous_superfamily | Thyroglobulin type-1 superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10915 | SYNDECAN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0009986 | Cellular Component | cell surface | Interproscan |
| GO:0016020 | Cellular Component | membrane | Interproscan |
| GO:0016477 | Biological Process | cell migration | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K16336 | SDC2, CD362; syndecan 2 | - | Cell adhesion molecules (CAMs) | ko04514 | PMID: 28812709 |
| Proteoglycans in cancer | ko05205 | PMID: 28812709 | |||
| Fluid shear stress and atherosclerosis | ko05418 | PMID: 28812709 | |||
| Malaria | ko05144 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_22089-0.17 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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