Gene detail

Detailed information of Bpl_scaf_22089-0.16 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_22089-0.16	FRIZZLED	Bpl_scaf_22089	152470	178714	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_22089-0.16

ATGACATTATACAGCATTTTTGTGATATTATTTTGTTTCTTTGAAACATGTTATGGGGCGTGTAAACAAAATTCGACATGCCAGTCCTTAAATAGTACAACTACATGTTTTGGCACTACTCTGCCTTTCACACATACTTCGTTGGAATTTACGACAGATTCATCGACGCTGGATGAAGTGAACGAGAAATTAAAACTTTGGGAGGGTTTAAAATATGTTCCAGAGTGCTGGGCTTTGATTCAGCCATTTCTTTGTTCTGTTTATTTACCAAAATGTGACAGTGGAGAGGTTGAGTTACCTAGTAAAGAACTCTGCAAGAAGATCAAATCTCCGTGTAAAATCGTAGAGATTTACAGAGGAGCTTGGCCAGATTTCCTGGACTGCGATGAGAATCATTTCATGTCTAATTGTCTGTTACAAGCCTATGACACTGTAGTTTTTAACACAGAAGGATCTTGTATTTCTCCACTGGTCAGAACGGAGGATTCAGAAAGTTGGTACACAGATATAGAGGGATGTGGAATACAGTGTCAGAATCCACTCTATACAGATGGTGAACACAACCAAGTCCACATCATTATTGCTATATTTGGATCAATCTGTATCACCTGTACTCTTTTTACTATGCTGACCTTTTTAATTGATTGGAAAAATTCAAAGAAATATCCAGCATTAATTTTATTCTTCATCAACATCTGTTTCTTCCTGTCCAGTATTGGATGGATGGCTCAGTTTTCAGGAGAGGCTCGGACAGACATCGTCTGTAAGGGTGATGGTACCATTCGTAAAGGAGGACCACAAACAGGGGAGACAGCGTCATGTACAGTCGTTTTTATCCTCATATACTACTTCTTTATGGCTGGTGCCATCTGGTTTGTCATGTTGGCTTACGCTTGGCATTTGACCTTTAAAGCTCTAGGCACGCCTAGAGATGATCTCTCTAATAAGACGTCCTACTTCCATCTTGCTAGTTGGAGCATACCACTAGTCTTGACGATAGTGTGTTTAGCTGTATCTGAGATTGATGGTGACTCAGTAAGTGGTATATGTATGGTTGGTTTCAATAATAAAGGATATCGTGCTGGTTTCCTTCTGGTACCCATCATACTGGTATTAATACTTGGCATGTTTTTTTTAGTCAAAGCTTTTAAGACATTATGGGCTTTAAAGAGTGACACTCCAGAATTTATAAGTGAAAAAGCCACATCTAAGATCAAAGAAACAATAATTAGACTAGGTATGAAGTTTGATTTGAACAGCGTAAGTTCACGTGAGATGTCATCTGCTTTTGCTAATGCGATGCCAAAGTTGGTTAGAAGAAGGGGAGGAATGTTTGCTCCTACTGCGGGGACTAATCGTAGATACTCTGATTCAGGTAGGAGAAGAAAGAGAAAGAAGAGAAGAAAAAGCCGCAAAAACAAGATTCAGCCAGTTTTAGCCCCTGTTACTAGGGAAATGGCAGCCGGTGCTTACGGAGGGCGTCGCCGAGGGAAGCGACGAAGCAGCAAGAGTTCTCTCGGCAGTCGTGCCTCTGCACAGGGTATTGACATCAATGTAGAGAAGAACAGCATGGAGGCTGTATCTATTACGTCCTACTCTCATCAAGGCAGCTTAGACAATGCAACATTGCCTATTCCACCACAAAGTCTTACAACAAACTTTGCCATTTTTACGGCAAGCACTTATGCCGGCGAATTAAAAACAAAAGTGAACAACGACAGTGATAATGGGTCAGTCAGACAAAATGGTGGAGTGAGAAACCGCAACAACATCAGACGAACTAGAAATAATAGTGCAAGTGTACCAAGTGGGAGCAGAAAAAGACTGCATAGTTCATTTAATAATTCTAGGCAGGGTAGCGCATCTAGTTTACGTCGAAGAGACGCTGCCTTGGAAACAAGCAATTCTCGACAAGGTAGTGGTTCCAGCTTGCGACGCAGGGATGCTGCTATAGAAACAAGTAATAATTTAAGACAGGGAAGTGCATCTAGTTTTCGACAAAGGGAAGTTGCCATGGAAATGAGAGAAACAAGGACAAATAGACAATACAAGAAACCAAGTTCGGCAACCAGTCGTTCAAGTCATGGAACTAGACAGTCTTCTGCAACATCGAATCGGTCAAACATGTCAATCAGTCGACAGTTGCCAGGGGAAACAGCTGTAGTCCAAATAGAAGATGATTTTATTTCTCAAGGGTCGTTAGATTGA

Transcript

Bpl_scaf_22089-0.16

TTTTTGAGTATTGGATAAATGGAATTTTTTTTACTCCATGTTAAGTATGGATATATGCCGTAATGACAATTTGAACTTTATTCTTTAAAAAAGAAAGACTTTTTTTTGAGTTTTGATTGACATTATTGAAGATTCGAAAATGGAACTATTTTTCCACTTTAATGGATAATTTTTAAATAAGAAATTGTTTTTAATTTTAATTTAACTTTTTCTTGAAATCTTTTTAAAGGTAAATCGGCAACAATGACATTATACAGCATTTTTGTGATATTATTTTGTTTCTTTGAAACATGTTATGGGGCGTGTAAACAAAATTCGACATGCCAGTCCTTAAATAGTACAACTACATGTTTTGGCACTACTCTGCCTTTCACACATACTTCGTTGGAATTTACGACAGATTCATCGACGCTGGATGAAGTGAACGAGAAATTAAAACTTTGGGAGGGTTTAAAATATGTTCCAGAGTGCTGGGCTTTGATTCAGCCATTTCTTTGTTCTGTTTATTTACCAAAATGTGACAGTGGAGAGGTTGAGTTACCTAGTAAAGAACTCTGCAAGAAGATCAAATCTCCGTGTAAAATCGTAGAGATTTACAGAGGAGCTTGGCCAGATTTCCTGGACTGCGATGAGAATCATTTCATGTCTAATTGTCTGTTACAAGCCTATGACACTGTAGTTTTTAACACAGAAGGATCTTGTATTTCTCCACTGGTCAGAACGGAGGATTCAGAAAGTTGGTACACAGATATAGAGGGATGTGGAATACAGTGTCAGAATCCACTCTATACAGATGGTGAACACAACCAAGTCCACATCATTATTGCTATATTTGGATCAATCTGTATCACCTGTACTCTTTTTACTATGCTGACCTTTTTAATTGATTGGAAAAATTCAAAGAAATATCCAGCATTAATTTTATTCTTCATCAACATCTGTTTCTTCCTGTCCAGTATTGGATGGATGGCTCAGTTTTCAGGAGAGGCTCGGACAGACATCGTCTGTAAGGGTGATGGTACCATTCGTAAAGGAGGACCACAAACAGGGGAGACAGCGTCATGTACAGTCGTTTTTATCCTCATATACTACTTCTTTATGGCTGGTGCCATCTGGTTTGTCATGTTGGCTTACGCTTGGCATTTGACCTTTAAAGCTCTAGGCACGCCTAGAGATGATCTCTCTAATAAGACGTCCTACTTCCATCTTGCTAGTTGGAGCATACCACTAGTCTTGACGATAGTGTGTTTAGCTGTATCTGAGATTGATGGTGACTCAGTAAGTGGTATATGTATGGTTGGTTTCAATAATAAAGGATATCGTGCTGGTTTCCTTCTGGTACCCATCATACTGGTATTAATACTTGGCATGTTTTTTTTAGTCAAAGCTTTTAAGACATTATGGGCTTTAAAGAGTGACACTCCAGAATTTATAAGTGAAAAAGCCACATCTAAGATCAAAGAAACAATAATTAGACTAGGTATGAAGTTTGATTTGAACAGCGTAAGTTCACGTGAGATGTCATCTGCTTTTGCTAATGCGATGCCAAAGTTGGTTAGAAGAAGGGGAGGAATGTTTGCTCCTACTGCGGGGACTAATCGTAGATACTCTGATTCAGGTAGGAGAAGAAAGAGAAAGAAGAGAAGAAAAAGCCGCAAAAACAAGATTCAGCCAGTTTTAGCCCCTGTTACTAGGGAAATGGCAGCCGGTGCTTACGGAGGGCGTCGCCGAGGGAAGCGACGAAGCAGCAAGAGTTCTCTCGGCAGTCGTGCCTCTGCACAGGGTATTGACATCAATGTAGAGAAGAACAGCATGGAGGCTGTATCTATTACGTCCTACTCTCATCAAGGCAGCTTAGACAATGCAACATTGCCTATTCCACCACAAAGTCTTACAACAAACTTTGCCATTTTTACGGCAAGCACTTATGCCGGCGAATTAAAAACAAAAGTGAACAACGACAGTGATAATGGGTCAGTCAGACAAAATGGTGGAGTGAGAAACCGCAACAACATCAGACGAACTAGAAATAATAGTGCAAGTGTACCAAGTGGGAGCAGAAAAAGACTGCATAGTTCATTTAATAATTCTAGGCAGGGTAGCGCATCTAGTTTACGTCGAAGAGACGCTGCCTTGGAAACAAGCAATTCTCGACAAGGTAGTGGTTCCAGCTTGCGACGCAGGGATGCTGCTATAGAAACAAGTAATAATTTAAGACAGGGAAGTGCATCTAGTTTTCGACAAAGGGAAGTTGCCATGGAAATGAGAGAAACAAGGACAAATAGACAATACAAGAAACCAAGTTCGGCAACCAGTCGTTCAAGTCATGGAACTAGACAGTCTTCTGCAACATCGAATCGGTCAAACATGTCAATCAGTCGACAGTTGCCAGGGGAAACAGCTGTAGTCCAAATAGAAGATGATTTTATTTCTCAAGGGTCGTTAGATTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01392	Fz	Fz domain	Domain	Interproscan
PF01534	Frizzled	Frizzled/Smoothened family membrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000539	Domain	Frizzled/Smoothened, 7TM	Interproscan
IPR015526	Family	Frizzled/secreted frizzled-related protein	Interproscan
IPR017981	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR020067	Domain	Frizzled domain	Interproscan
IPR036790	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11309	FRIZZLED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005113	Molecular Function	patched binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005929	Cellular Component	cilium	Interproscan
GO:0007166	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0007224	Biological Process	smoothened signaling pathway	Interproscan
GO:0007389	Biological Process	pattern specification process	Interproscan
GO:0007417	Biological Process	central nervous system development	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016021	Cellular Component	membrane	Interproscan
GO:0030425	Cellular Component	dendrite	Interproscan
GO:0071679	Biological Process	commissural neuron axon guidance	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06226	SMO; smoothened	-	Hedgehog signaling pathway	ko04340	PMID: 28812709
			Hedgehog signaling pathway - fly	ko04341	PMID: 28812709
			Axon guidance	ko04360	PMID: 28812709
			Pathways in cancer	ko05200	PMID: 28812709
			Proteoglycans in cancer	ko05205	PMID: 28812709
			Basal cell carcinoma	ko05217	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_22089-0.16 global RNA-seq network