Gene detail

Detailed information of Bpl_scaf_2201-13.29 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_2201-13.29	VACUOLAR ATP SYNTHASE SUBUNIT S1	Bpl_scaf_2201	1301528	1310001	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_2201-13.29

CCACCCCACACCACACTCAAAAAACAATTTTGTGAAACACACTTCTGATTATATTTACCAATCTTGCAAACATATTTACTTATATGACCATCATAGTTAGAAGAATGTATAACTTTGTAAATTGCTTGCAGTTTAATATCAGATACGAGAAAGTCGAGCGTCCAGCACCCGTGGACGGTGCTCTTGTTAATGGAATAATTGCTCTTTTTGACTTGGAATAAATTCATCATCAAAAAGTTTATATGCAAAAACCATCTTTTAAAATTTAATGGAAATTACATGGTATGTTTCTCAAAGATGAAAGAATGTTGGGTGAAGACAATTTGATTTTGTGTAAAATATAACCATTATTTTTCAAAATGTTTGTGACCCCTATGAAACGTATGTTTTCTTAATTGGCAGATCGGAAGATCGCAGAAATTACGAAACCGCTGACCAAACGTGGTGTAAAATTTACAGCACTGTACTTAGGAAAGACTGCCTCTAAGGATTCTGCAGTACAAGTTGGAGTAAATCGTCGACTGCTAGCTGTCAGTGACTCCCTTTGTGCCGATAGTAATTGTACATTCCTGAATATCTCATGTGCTGATAGGGAACCTGTGTTTTTCTACCAGAACAATTCTATAGTTGTTGTTGAAATAGGTCCAACGAAAAAAAACCATACAATTGAAGATATTACAGATATTGGTACCACCTGTGATAATGATACTGTAACATGGAATATCGTGAGGGATAACAAAACAGAATACTGGAAAATTAATTCTGACAACATTAATTTGTCTTGGAAAATGCATGTTGACAACGCCAGTGGCAGTGGAGAATCTAAATATTTCGGCAAAAATATGTCAGCTCCACATAATTTCTCCTACCATTGCTCAGCCTACATAATCAAATACAAACTTAATGAAACGGCTAATGGTAATGTCTCTGTCAATGTCACTCTAATCTTGAATGGTTTCCAGTTACAACCCTTCAGTGTCATGGATGGGAAGTTTTCTGATGGCTGGGACTGTGTAGTGTTCTTCACTGAAGGGATATGGATGGCAATTATTTGCGTCTTGCTGATGATCATCATCATTCTGTTTGGGCTGAACATGATAGCATCACTTAAGACCATGGACAGATATGATGATCCGAAAGGAAAGACTATTACTGTTAATGTCAGTGAATAAGATCTGGAATTAAGGAAAATGATTACAAACGAACAAACAAACCTTTCCAAAAATAAAAATGAAATTAAACAGATTTTTTGGAAAACTCAACACCACATAAGCTGCATCAAGTATATACTGATCATATTAAAGAAAATGATACATCAGTGCAGAGGAAAGAAAAATTGGATTTCAAAACAAACAAAAAAATCAAACGATAACGAGGTGTAATTCAAAGCGAAATTTAAAAACATTATAAAAAGAAAAATTACAAGGATGAAATTGGAAATATTCTGGTAAAACACGTTTTTACCAGTCTATAACTTAGCTCAAAAGGGGGAGTGGGTATCTGGATCCGCCTACGCATCAGTGTGTATGGTGAACAATCAAATCCAAATTTCCTTCAAGATTTGAGAAATTGAGAAATAAAGTAATATAATATAAACCTACCATGATTAGGAAACCTTTGTCATTTTAATTGGATATTCCCATAACTGGAGAAATGCTTAATTTTTATATTGTTGCAAGATTTATTTCAAGATTCAAGATTTTATTGAAAAGCACAGGCACACAGGGTGCAACATAAACAAACATATAAAGCAATACTATATATATAGAAAACATAGAGAGGACATAATAATAGATACATGGACTGATTCATTTCAAGTTGATCATGGGAATAGTTTCATAATACATTTAACAAAATTTTTTATATGATATTCTTTTTTCATTATCTCTACATTACAAACAGGTGACATTCTTTACATTTTTTTTAATGCTAGAATTCTATATACATATTGTATAATAATTAGGAATAAATTTGTTTTGAAGAGCATTTCATTCTGACACTGCTTATATTTATAAACCAGTATATTTAATTTTTGTGGCTTATATATTTGGTATGATTTAAATAAAATGTTAGAATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05827	VAS1_LD	V-type proton ATPase subunit S1, luminal domain	Domain	Interproscan
PF20520	Ac45-VOA1_TM	V0 complex accessory subunit Ac45/VOA1 transmembrane domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008388	Family	V0 complex accessory subunit Ac45	Interproscan
IPR046755	Domain	V-type proton ATPase subunit S1, luminal domain	Interproscan
IPR046756	Domain	V-type proton ATPase subunit S1/VOA1, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12471	VACUOLAR ATP SYNTHASE SUBUNIT S1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03662	ATPeVS1, ATP6S1; V-type H+-transporting ATPase S1 subunit	-	Oxidative phosphorylation	ko00190	PMID: 28812709
			Phagosome	ko04145	PMID: 28812709
			Lysosome	ko04142	PMID: 28812709
			Rheumatoid arthritis	ko05323	PMID: 28812709
			Vibrio cholerae infection	ko05110	PMID: 28812709
			Epithelial cell signaling in Helicobacter pylori infection	ko05120	PMID: 28812709
			Tuberculosis	ko05152	PMID: 28812709
			Hepatitis B	ko05161	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_2201-13.29 global RNA-seq network