| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_21899-3.3 | SMAD | Bpl_scaf_21899 | 328084 | 358931 | - |
| CDS | |||||
| Bpl_scaf_21899-3.3 | |||||
| Transcript |
| Bpl_scaf_21899-3.3 |
| Protein |
| Bpl_scaf_21899-3.3 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | MH1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03165 | MH1 | MH1 domain | Domain | Interproscan |
| PF03166 | MH2 | MH2 domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001132 | Domain | SMAD domain, Dwarfin-type | Interproscan |
| IPR003619 | Domain | MAD homology 1, Dwarfin-type | Interproscan |
| IPR008984 | Homologous_superfamily | SMAD/FHA domain superfamily | Interproscan |
| IPR013019 | Domain | MAD homology, MH1 | Interproscan |
| IPR013790 | Family | Dwarfin | Interproscan |
| IPR017855 | Homologous_superfamily | SMAD-like domain superfamily | Interproscan |
| IPR036578 | Homologous_superfamily | SMAD MH1 domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13703 | SMAD | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000978 | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005667 | Cellular Component | transcription regulator complex | Interproscan |
| GO:0006355 | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0006357 | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0007179 | Biological Process | transforming growth factor beta receptor signaling pathway | Interproscan |
| GO:0009653 | Biological Process | anatomical structure morphogenesis | Interproscan |
| GO:0030154 | Biological Process | cell differentiation | Interproscan |
| GO:0030509 | Biological Process | BMP signaling pathway | Interproscan |
| GO:0060395 | Biological Process | SMAD protein signal transduction | Interproscan |
| GO:0070411 | Molecular Function | I-SMAD binding | Interproscan |
| GO:0071144 | Cellular Component | heteromeric SMAD protein complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K04501 | SMAD4; mothers against decapentaplegic homolog 4 | - | Wnt signaling pathway | ko04310 | PMID: 28812709 |
| TGF-beta signaling pathway | ko04350 | PMID: 28812709 | |||
| Hippo signaling pathway | ko04390 | PMID: 28812709 | |||
| Apelin signaling pathway | ko04371 | PMID: 28812709 | |||
| FoxO signaling pathway | ko04068 | PMID: 28812709 | |||
| Cell cycle | ko04110 | PMID: 28812709 | |||
| Adherens junction | ko04520 | PMID: 28812709 | |||
| Signaling pathways regulating pluripotency of stem cells | ko04550 | PMID: 28812709 | |||
| Th17 cell differentiation | ko04659 | PMID: 28812709 | |||
| Pathways in cancer | ko05200 | PMID: 28812709 | |||
| Colorectal cancer | ko05210 | PMID: 28812709 | |||
| Pancreatic cancer | ko05212 | PMID: 28812709 | |||
| Chronic myeloid leukemia | ko05220 | PMID: 28812709 | |||
| AGE-RAGE signaling pathway in diabetic complications | ko04933 | PMID: 28812709 | |||
| HTLV-I infection | ko05166 | PMID: 28812709 | |||
| Hepatitis B | ko05161 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_21899-3.3 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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