Gene detail

Detailed information of Bpl_scaf_21658-3.22 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_21658-3.22	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	Bpl_scaf_21658	456467	480238	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_21658-3.22

ATGACTGTTGGTAAAGATGTCAGTGCACTGTTTCCAGATGTAGTTAACTGTATCCAGACAGACAATCTAGAATTAAAGAAACTTGTATATTTATACCTGATGAATTATGCTAAAAGTCAACCAGACATGGCTATCTTAGCAGTAAACACATTTGTCAAGGACTGTGAAGATTCTAACCCCCTCATTAGAGCTCTAGCTGTTAGAACCATGGGATGTATAAGAGTTGATAAAATTATAGACTATTTATGTCAACCACTCAGAAACTGTCTGAAAGATGAGGATCCTTATGTGAGGAAGACTGCTGCTGTGTGTGTAGCCAAACTGTATGATATTAATGCCCAGCTAGTAGAAGATCAAGGCTTTTTAGATTTACTGAGGGATATGCTGTCAGATTCTAACCCTATGGTTGTCGCAAATGCAGTTGCCGCCATATCAGAGATCTTAGAATCATCACCAACAGCTCAACAGGTTCTGGAAATGAATGCTAGTACTATTAATAAGTTACTGACAGCTTTAAATGAATGTACAGAATGGGGACAAGTGTTCATTCTGGATGCCATATCTAACTATACACCAAAAGATGATAAAGAAGCACAAAGTGTTTGTGAGAGAGTTACACCACGACTGGCTCATGCTAATGCTGCTGTTGTATTATCAGCTGTCAAGGTTATTATGAAATTCATGGAGATGTTGGATGCTAATTCAGAATATGTTATGACACTTGTAAAGAAGTTGTCTCCCCCTCTGGTAACTCTCCTGTCAGCAGAACCAGAAATACAATATGTTGCTTTGAGAAACATCAATCTTATTGTACAGAAAAGACAAGATATTCTGAAGAATGAGATGAAAGTATTCTTTGTGAAATACAATGATCCTATCTATGTTAAGTTAGAAAAGTTAGACATTATGATCCGACTGACAAGTCAGGCCAACATAGCTCAAGTCCTGGCTGAACTCAAAGAGTATGCCACAGAAGTTGATGTTGACTTCGTGAGGAAATCTGTCAGAGCTATCGGTCGTTGTGCCATCAAAGTTGAACCTGCGGCTGAAAAATGTGTGAGCACACTCCTTGATCTTATACAGACTAAAGTCAACTATGTTGTACAAGAGGCCATTGTTGTGATCAAGGACATCTTCAGGAAGTACCCTAACAAATATGAGAGCATCATTGCCACCCTATGTGAGAACCTTGATACATTGGATGAACCAGAAGCAAGAGCTTCTATGATATGGATCATAGGAGAATATGCTGAAAGAATTGACAATGCTGATGAATTATTAGAGAGCTTTTTAGAAGGATTCCAGGATGAAAATTCACAGGTACAGTTACAGTTATTGACAGCCATTGTGAAATTATTTTTGAAGAGACCAACAGATACTCAGGAACTGGTACAACAAGTTCTTAGTTTAGCTACTCAGGATAGTGACAACCCTGATCTAAGAGACAGAGGCTACATTTATTGGCGGTTGCTATCAACAGACCCAGCTGCTGCTAAGGAAGTAGTATTAGCAGAGAAACCTTTGATCTCTGAGGAAACAGATCTGATTGAACCCACATTACTTGATGAATTGATATGTCATATATCTAGTCTGGCATCTGTTTATCACAAACCTCCAAATTCATTTGTTGAAGGTCGTCAAGGTGGTTTGAGAAGAGCACTTCCACCAAAGTCCAACTCTGGTAACTTGGAAGAACCAGAAGCCCAACCAGCAGAGGCTGAGGTTGTTAGTGCCCCACCAGGAGCCCAGCCCACTGTAATTCCAGGTGTGGACTCTTTAATAGGAGATCTGTTAGATATGGACCTTGGTGGTCCATCAATGCAGCAGCAACAGATGTTTTCTGGTCCCTCACAAACCCCTTTACAGAGTTCTGGAGGAATGGACCTTCTTGGTGGAGGACTAGATTCTTTGCTTGGAGGACCAGCCCCTTCAGGAGATGGTGGTCTAGGTGGTTTAGGAGATATATTTGGAATGTCACAAACACCATCATATGTACCACCACAAGAGGTCTGGTTACCAGCATCTAAAGGCAAAGGATTAGAAATAACAGGAACATTTATACGTAAAAATAAACAAATAATTATGGATCTTACGTTTGCTAATAAAGCCATGCAACCTATGGCAGGATTTGCTATACAGTTTAATAAAAATAGTTTTGGTTTAATACCAGCCAATCCTTTACAAATACAGAGCCCTCTACCACCAAACCAAAGTGCCAGTTCATCGTTAGTACTTAATACAACTGGACCAATACAGAAAATGGAACCACTCACTAATTTACAGGTTGCAGTTAAGAACAGTATAGATGTGTTTTACTTTAATGCTACTGTTCCTATACATGTGTTCTTTGTTGATGATGGTGAAATGGAGAAACGTGTTTTCTTGGCAACATGGAAAGATATTCCAGCTCAAAATGAGGTGCAATACACAATAACTAACGTAGAACATAATGCGGACACAGTTTCAGCCAAGCTACGGAACAATAATATATTTACTGTTGCCAAGCGAAATGTTGAAGGACAAGATATGTTGTACCAGTCATTAAAACTGACCAATGGAATCTGGGTATTAGCAGAACTGAAGATTCAACCACCTAACCCTAATTTTGTGGACAGCTATCAAGACACATGGAACTTTATTTGTGCATCAAAGAAAGGGGAAACTTTCTTTCACTGTACCGTCTGTGCCATTGACATTGCATGTGCTCACGGGGACAAAAGTGAAGTTCTTCGTCATGTTGGAACCAAAAACCACATTGTCCTAGCAAAAGTAAAGCAGAACTGTCGTTCTATGAAGACCTTTATAAGCAGTCCAAACATGACTAACAGCGAGATCGACCTACGGAGAGCAGTAACGAAATCGGAAACGATAATGTGCCAACTGATTGTAAACCTGAACCTGCCTTTATCAACAGCAGATACCTTTAGCAGTATTGTCTTTTTTCATGAAGAAAGCACGGGACACTGCAATAAAAGGTGCCATTGGCAGGTATAA

Transcript

Bpl_scaf_21658-3.22

TCACAGGTGAAATATATGAATTGAAGACAGAATTACAAAGTGAAAAGAGAGAGAAAAAGAAAGAAGCTGTGAAAAAAGTGATAGCCAGTATGACTGTTGGTAAAGATGTCAGTGCACTGTTTCCAGATGTAGTTAACTGTATCCAGACAGACAATCTAGAATTAAAGAAACTTGTATATTTATACCTGATGAATTATGCTAAAAGTCAACCAGACATGGCTATCTTAGCAGTAAACACATTTGTCAAGGACTGTGAAGATTCTAACCCCCTCATTAGAGCTCTAGCTGTTAGAACCATGGGATGTATAAGAGTTGATAAAATTATAGACTATTTATGTCAACCACTCAGAAACTGTCTGAAAGATGAGGATCCTTATGTGAGGAAGACTGCTGCTGTGTGTGTAGCCAAACTGTATGATATTAATGCCCAGCTAGTAGAAGATCAAGGCTTTTTAGATTTACTGAGGGATATGCTGTCAGATTCTAACCCTATGGTTGTCGCAAATGCAGTTGCCGCCATATCAGAGATCTTAGAATCATCACCAACAGCTCAACAGGTTCTGGAAATGAATGCTAGTACTATTAATAAGTTACTGACAGCTTTAAATGAATGTACAGAATGGGGACAAGTGTTCATTCTGGATGCCATATCTAACTATACACCAAAAGATGATAAAGAAGCACAAAGTGTTTGTGAGAGAGTTACACCACGACTGGCTCATGCTAATGCTGCTGTTGTATTATCAGCTGTCAAGGTTATTATGAAATTCATGGAGATGTTGGATGCTAATTCAGAATATGTTATGACACTTGTAAAGAAGTTGTCTCCCCCTCTGGTAACTCTCCTGTCAGCAGAACCAGAAATACAATATGTTGCTTTGAGAAACATCAATCTTATTGTACAGAAAAGACAAGATATTCTGAAGAATGAGATGAAAGTATTCTTTGTGAAATACAATGATCCTATCTATGTTAAGTTAGAAAAGTTAGACATTATGATCCGACTGACAAGTCAGGCCAACATAGCTCAAGTCCTGGCTGAACTCAAAGAGTATGCCACAGAAGTTGATGTTGACTTCGTGAGGAAATCTGTCAGAGCTATCGGTCGTTGTGCCATCAAAGTTGAACCTGCGGCTGAAAAATGTGTGAGCACACTCCTTGATCTTATACAGACTAAAGTCAACTATGTTGTACAAGAGGCCATTGTTGTGATCAAGGACATCTTCAGGAAGTACCCTAACAAATATGAGAGCATCATTGCCACCCTATGTGAGAACCTTGATACATTGGATGAACCAGAAGCAAGAGCTTCTATGATATGGATCATAGGAGAATATGCTGAAAGAATTGACAATGCTGATGAATTATTAGAGAGCTTTTTAGAAGGATTCCAGGATGAAAATTCACAGGTACAGTTACAGTTATTGACAGCCATTGTGAAATTATTTTTGAAGAGACCAACAGATACTCAGGAACTGGTACAACAAGTTCTTAGTTTAGCTACTCAGGATAGTGACAACCCTGATCTAAGAGACAGAGGCTACATTTATTGGCGGTTGCTATCAACAGACCCAGCTGCTGCTAAGGAAGTAGTATTAGCAGAGAAACCTTTGATCTCTGAGGAAACAGATCTGATTGAACCCACATTACTTGATGAATTGATATGTCATATATCTAGTCTGGCATCTGTTTATCACAAACCTCCAAATTCATTTGTTGAAGGTCGTCAAGGTGGTTTGAGAAGAGCACTTCCACCAAAGTCCAACTCTGGTAACTTGGAAGAACCAGAAGCCCAACCAGCAGAGGCTGAGGTTGTTAGTGCCCCACCAGGAGCCCAGCCCACTGTAATTCCAGGTGTGGACTCTTTAATAGGAGATCTGTTAGATATGGACCTTGGTGGTCCATCAATGCAGCAGCAACAGATGTTTTCTGGTCCCTCACAAACCCCTTTACAGAGTTCTGGAGGAATGGACCTTCTTGGTGGAGGACTAGATTCTTTGCTTGGAGGACCAGCCCCTTCAGGAGATGGTGGTCTAGGTGGTTTAGGAGATATATTTGGAATGTCACAAACACCATCATATGTACCACCACAAGAGGTCTGGTTACCAGCATCTAAAGGCAAAGGATTAGAAATAACAGGAACATTTATACGTAAAAATAAACAAATAATTATGGATCTTACGTTTGCTAATAAAGCCATGCAACCTATGGCAGGATTTGCTATACAGTTTAATAAAAATAGTTTTGGTTTAATACCAGCCAATCCTTTACAAATACAGAGCCCTCTACCACCAAACCAAAGTGCCAGTTCATCGTTAGTACTTAATACAACTGGACCAATACAGAAAATGGAACCACTCACTAATTTACAGGTTGCAGTTAAGAACAGTATAGATGTGTTTTACTTTAATGCTACTGTTCCTATACATGTGTTCTTTGTTGATGATGGTGAAATGGAGAAACGTGTTTTCTTGGCAACATGGAAAGATATTCCAGCTCAAAATGAGGTGCAATACACAATAACTAACGTAGAACATAATGCGGACACAGTTTCAGCCAAGCTACGGAACAATAATATATTTACTGTTGCCAAGCGAAATGTTGAAGGACAAGATATGTTGTACCAGTCATTAAAACTGACCAATGGAATCTGGGTATTAGCAGAACTGAAGATTCAACCACCTAACCCTAATTTTGTGGACAGCTATCAAGACACATGGAACTTTATTTGTGCATCAAAGAAAGGGGAAACTTTCTTTCACTGTACCGTCTGTGCCATTGACATTGCATGTGCTCACGGGGACAAAAGTGAAGTTCTTCGTCATGTTGGAACCAAAAACCACATTGTCCTAGCAAAAGTAAAGCAGAACTGTCGTTCTATGAAGACCTTTATAAGCAGTCCAAACATGACTAACAGCGAGATCGACCTACGGAGAGCAGTAACGAAATCGGAAACGATAATGTGCCAACTGATTGTAAACCTGAACCTGCCTTTATCAACAGCAGATACCTTTAGCAGTATTGTCTTTTTTCATGAAGAAAGCACGGGACACTGCAATAAAAGGTGCCATTGGCAGGTATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF02883	Alpha_adaptinC2	Adaptin C-terminal domain	Domain	Interproscan
PF09066	B2-adapt-app_C	Beta2-adaptin appendage, C-terminal sub-domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225	Repeat	Armadillo	Interproscan
IPR002553	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR008152	Domain	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Interproscan
IPR009028	Homologous_superfamily	Coatomer/calthrin adaptor appendage, C-terminal subdomain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR012295	Homologous_superfamily	TBP domain superfamily	Interproscan
IPR013037	Homologous_superfamily	Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain	Interproscan
IPR013041	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR015151	Domain	Beta-adaptin appendage, C-terminal subdomain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR026739	Family	AP complex subunit beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11134	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117	Cellular Component	membrane coat	Interproscan
GO:0030131	Cellular Component	clathrin adaptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12392	AP1B1; AP-1 complex subunit beta-1	-	Lysosome	ko04142	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_21658-3.22 global RNA-seq network