Gene detail

Detailed information of Bpl_scaf_21636-3.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_21636-3.9	WD REPEAT DOMAIN-RELATED	Bpl_scaf_21636	336578	394982	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_21636-3.9

ATGTCTTTTTCGGCTGCTTTACTTCAGGAATTGTGTGATGACTCAACTAACAACGTTGGATACCGGCCAAGGAGGCCCATTACCTACCATGAGTACCAAAACAACTTCTTAAAACAAGCTATAAACCCATTCTTTCTGAAAGCCAGAAAGGTCATATGTCATGGGTCATATCCTGACCTTAATTCCCGTTTTCCTATTTTCAAACCTCTGCAAGTGATTGCCATACCTAACAACACAAAGTTGAAGTATGTATCTTGGAATAAAGACCAGGGTTATATAGCATGTGGTGGAGAAGAAGGACTTCTTAAAGTTCTTAAGTTAGAAACTGCAACAGGTAAAGATGCTAAAGTGAAAGGTTTAGCAGCACCTAGTAACCTGTCTATGAACCAGACGTTAGAGGGACATAGTGGAGCTGTACAAGTTGTCACCTGGAATGAACAATACCAGAAATTGACCACTAGCGATCAGTATGGTCTTATTATTGTATGGATGTTATACAAAGGAATGTGGTATGAGGAGATGATAAACAACAGAAACAAGTCTGTAGTACGTAGTATGGGGTGGAATGCTGACGGACAGAAAATATGTATTGTTTATGAAGACGGAGCTGTCATTGTAGGCTCTGTGGATGGTAACAGGATATGGGGGAAGGAATTAAAAGGACAACAACTGGCTCATGTTACATGGTCTCCAGATGGTAAGATTTTATTGTTTGGGATGACGAATGGAGAAGTACATATCTATGACAACACAGGAAACTTTATTTCTAAAGTACAGATCTACTGTCTGTCTGGTGTGAGTGGTGCCCTACACATTGCTGGATTACAGTGGTATAATGGTGTTAATGGTTATGTAGAACCTAACTGTCCAAGTATGGCCATCTGTTTTGATTCTGGAAGATGTCAAATCATGAGGAGTGAACTTGATGAAAATCCAGTCCTTATAGACACTGGAATGCAGGTTACACAGATTGCCTGGAACCATACTGGTTCTGTATTAGCTGTAGCTGGGTCACAGAGAGCTCTGGGACAGGAGAAAGAAGTTAATGTTGTTCAGTTTTATGCTCCTTTTGGTGAACATTTGAGAACTCTAAAGGTACCAGGAAAACAAATAGCATCATGTTCTTGGGAAGGAGGAAGTTTAAGAATAGCTTTGGCTGTGGACAGCTTTATCTACTTTGCTAATATTAGACCTGATTACAAGTGGGGATACTGTTCCAATACTGTTGTGTATTCCTTTACTAAGCCAGAGAGAGTAGAACACTGTGTTATATTTTGGGACACCAAAAATGGTGAGAAATATGTTAAGTATGTGAGAAATCTAATAGCAATTACTGCCTGTGGAGATTACTGTTGCCTAGCAACTAAAGCAGACGATGCCACCAATCAGTATGTTCTTGTATTGTGTAACTCGATTGGAACACCCCTGGATTCCAAATATGTAGAAATTGACCCTGTTTATCTGACCATGACAAAGACCCATATAATCACCGCTTCAAAAGAGGCTTTCTACACCTGGCAGTTTAAAAATCCCAAGAAGTTATCTACCTTGGAAGTAGCTGGACGTAGGAGATCAGGAACAGAAAGATTACATCATATTGATGAACAACCATCAGGGGGCGCTGCACAAGAGGAAGTGGACTTTTCTAAGGCTTTTCAGAATACAGAAGATCCTATTTGCTGTTTATGTTCCTCTGATAAGGTTCTGATTGTGGGTAGAGAATCAGGAACATTAAATAGATATTCTATGCCCATGTTATCCTTGACCCACAAATATGCCTTGACCTGCAGACCACATCAACTGTCACTCAACTCTACATCAAGTCGTCTGTCAATTATTGACATCAGTGGAGTTTTGACGTTTTTTGACATCGACACCAGAATCACAGACACTGATGGTAAAGAGGTCATAGGAGAACATCTTAAATTTGAACGTAAAGATGTCTGGGACATGAGATGGGCTGAGGATAACCCAGAATTATTTGCTATGATGGAGAAGACCAGAATGTATATTTTCAGGAACCTTGACCCTGAGGAACCAATCTTAAGCAGTGGTTATATCTGTAATTTCAATGATCTACAGATTAAATCAGTTCTCTTAGACGAAATTATGAAAGATCCTGAAAACCCGACAAAAGAAAGCATGGCAGAGATGGAGATTAAGTCGCTGCGGGATACTAGAGATTTATTGGAGAAAGTCGGTATAGCTGATGCCCAACAATTTATAGAAGACAACCCACACCCACGTCTATGGAGACTTTTGGCAGAATCTGCTTTAGAACAATTGAATCTTAAGGTGGCAGAGCAGGCCTTTGTACGATGTAGAGACTACCAAGGGATTGAATTTGTCAAACGATTGGGTAATTTACAGAGGGAAGACATGAAACAGGCAGAAGTGGCAGCTTATTTCAGAAGATTTGAGGAAGCTGAGAGGAAATATTTAGACATGGATAGAAGAGACCTTGCTGTGAGTTTGAGAAAGAAACTAGGAGACTGGTTCCGTGTTGTACAACTACTGAAGACAGGGTCAGGAGGAGATGATGTACAGTTAGAGGAGGCCTGGAACGCTATAGGGGATTATTATGCAGACAGACAAAAATGGCAACAGGCAGTGACATATTATGTTCAAGGTCGTAACCAAGAGAGACTATCAGAGTGTTATTACATGCTAGAAGATTATATGGGGTTAGAGAAAATGGTTTCTGCTCTACCAGAGAACCATAAGTTACTTCCTGAGATAGCGGCTATGTTTGTAACAGTAGGCATGTGTGAGCAAGCTGTCAATGCATACATTAGGTGTAACCATGTTAAGAAGGCTATAGACTGTTGTGTCCATTTGAATCAGTGGAACCAGGCCATAGAGCTAGCTAAGACTCACAATGTACGAGAGATTGACTCACTACTCGCCAAGTATGCTCAACATCTACTGGAGAAAAATAAAGTGGTGAATGCTATAGAACTCTACAGGAAGGCTGGACATTACTTAGAAGCTGCTAAATTATTGTTTAAGTTAGCCAATGAACAGACAAAGAAGAAATTAAAACCTCTACATATTAAAAAGATGTATGTACTGGGTGGTCTACTTGTGGAACAATACCATGAACAAATGAAAATGACCTCTAGGGCAAAGGTCAAGGACAAGAAAGGAGCAATGGCAGCGTCTGCTTTGGCTGGGTTTTTAGAAGAGGACTCGTCGGCCATTACAGACACCAGCATCATAGACGGTGCTTGGAGAGGAGCGGAAGCTTATCATTTTTATCTAATGGCACAGAGACAGCTTCATGAAGGATATGTAGATGCTGCTATGAAGACAGCATTGTATTTAAGGGAATATGAAGACATTATAGATCCTTGTGATGCATACTCTCTGCTAGCCTTGGCAGCGACTGCTAATAAAGCATTTGGAATGTGTTCTAAAGCCTTTATAAAACTGGAAACTTTAGAAACACTGACCCCAGAACAGAGAACAGCATACGAGGAACTAGCTCTAGAAATATTTACAAGACACAGTCCTAAAGATAACAGAGGGAGTAAGATAGAATGTACAAGCTGTGCTACAAGTATACCTGACTGGTGTACTGTCTGTCCAAATTGTGATACAAAATTCCCAACATGCATTGTAACAGGAAGACCCCTAATGGAGTACCAATTTTGGATGTGTAGTGCCTGCAAACATAGAGCTTATGAAACTGAAATATCAAATCGTCAAACTTGTCCGCTATGTCACACACAAGTGTAA

Transcript

Bpl_scaf_21636-3.9

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12894	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR017233	Family	WD repeat protein 35	Interproscan
IPR024977	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR039857	Family	Intraflagellar transport protein 122/121 homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12764	WD REPEAT DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0030991	Cellular Component	intraciliary transport particle A	Interproscan
GO:0035721	Biological Process	intraciliary retrograde transport	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan
GO:0061512	Biological Process	protein localization to cilium	Interproscan
GO:0097730	Cellular Component	non-motile cilium	Interproscan
GO:1905515	Biological Process	non-motile cilium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19674	WDR35, IFT121; WD repeat-containing protein 35	-	Cilium and associated proteins	ko03037	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_21636-3.9 global RNA-seq network