Gene detail

Detailed information of Bpl_scaf_21273-6.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_21273-6.13	MALATE AND LACTATE DEHYDROGENASE	Bpl_scaf_21273	741887	764507	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_21273-6.13

ATGTTTTCACGGTTAGCAAAACCAAGTGCCATCTCGTGTGTCATACGCAGACAATTTTCATCATCAACACAGTTAACGGCAAGTCATCAATCAAATCATAAAGTGACAGTCCTTGGTGCCAGTGGTGGGATAGGCCAACCCTTGTCTCTATTACTGAAGAATTCACAAAAAGTAGGCAGTCTGTCGCTCTATGATATTGCACACACACCAGGAGTTGCAGCTGATCTGAGCCACATAGAAACTAAATCAAAGGTTTCAGGACACATGGGCCCAGAACAACTGCAGGCATGTCTTGCTGGTTCAAAAGTAGTCCTGATACCTGCCGGAATGACAAGAGATGATCTTTTCAATACAAATGCCAGCATTGTGAGAGATTTAGTCACAGCTTGTGCAGATCATTGTCCAGAAGCCATGATCTGTATAATAACTAATCCAGTTAATTCAACAGTACCCATAGCATCAGAAGTTCTAAAGCAGAAGGGATGTTATGACCCAAAGAGGGTATTTGGTGTAACAACTTTAGATGTTGTGAGATCAAACACATTTGTTGCTGAAATGAAGGGTCTAGATGTATCTAAGTTAAATGTTCCTGTAATAGGAGGTCACAGTGGAGTAACAATCATACCTCTCATTTCACAAGCCACACCTCCAGTATCATTTCCTGCTGAAGAAAGAAAGAAATTGTCAGTCAGAATACAGAATGCTGGAACAGAAGTTGTAGAGGCTAAAGCTGGAGCTGGATCAGCTACATTATCAATGGCCTATGCTGCAGCCAGATTCACATTCTCCTTGTTAGAAGCTTTGGATGGTGGTGATGGACAAGTTGAGTGTGCATTTGTCAAATCTGATGAAACAGAAGCTAAATACTTTGCTACCCCAATTCTGTTAGGTAAAAAAGGTGTTGAGAAGAATCTTGGTATTGGTAAACTTATTGACTATGAAGTTAATTTGCTGCAAACTGCCATGCCAGAATTATTAGCAAACATTAAAAAAGGAGAAGACTTTGTTAATCAGTAATTAATCGTGTTCTGTTTTTGTTTAGAGGGGTGTTTATTTATTATGTAATTTTTGGACTGTCAAAAAAGGGTTATAAAAACATGGCCGAAATTATTCACCCTCTATAAATATTTCATCTTGCATGCAGTAAGTGAAAGGGTGTGAAATTTGGGTTCAAGTGTATTTTGTTTATTGTTCAGTGATATAGTTATTACCCGCAGTCAAAATGTATATACAGTCCATTATATATTTAACGACAGGTATATAAAAAAATAATTTGATGGAATCTCTAGTGGTTGACCATCTTCATCACAATGTAAACCACTCTTTAATATCTCTGGGAATTATTTTTTGCAATGAGATATAGTCTTCGTGTGGTAGACAGTGCTTTTCACAACCGGTGCACCAAATAAAACAAATATTGCTAAGTAATTTTATAATGCCTTGTAAATGTATTTAATTACAAATTTAGAGATGAAATTTTATAAATCTGATTAGAAGTGCAGTCATACCTGTCTTCAAAGACCACTCCAAATCATGGTCTCTAAACACAGGTGGTCTCTTAATACAGGTAAAATTTGTATGGAAAGTACTATAGTGGTTATTGAACAGGAAGGTCTTCTAACACAGTTGTTCTTTCCAACAGGTTTGACTAAATACTTGTTTTATCGGCAGTCTACTCAATATCATTGTCTTGGGTTACTTCAGAGATCAAATTTCAAATGACCAATCGTTGACAGTCTTACGAAATCTTTTGGTATTGAACAGCATAGCACTTAATTAAGAAGCCTAGAGATTCTGAAAGTGAATGAAAGGCTTCCTTGACTTAACCTAATGCATGATGCTGTAAGTGAATCGCAAGATAAAAATGAAACAAATAAAAATCATTGCACCAACATCTAATTTTAATTAATTTAATAATGATATGTGATTGTACCTATATATTGACCTTTTGATGGGTAATCAGCAATCTGCAGTTTTATGTTATGTCTTTCCAGAAGATAATGGAGATTATACATCGTAAATATAGTGCTATAAGTGACTCTAACGTGTGCTTTAATATCATTTAAATAATTTGTGAGATGTCATAGTCTTAGTTGTTATACCACAAATAAAATTATTGAATTTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00056	Ldh_1_N	lactate/malate dehydrogenase, NAD binding domain	Domain	Interproscan
PF02866	Ldh_1_C	lactate/malate dehydrogenase, alpha/beta C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001236	Domain	Lactate/malate dehydrogenase, N-terminal	Interproscan
IPR001252	Active_site	Malate dehydrogenase, active site	Interproscan
IPR001557	Family	L-lactate/malate dehydrogenase	Interproscan
IPR010097	Family	Malate dehydrogenase, type 1	Interproscan
IPR015955	Homologous_superfamily	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	Interproscan
IPR022383	Domain	Lactate/malate dehydrogenase, C-terminal	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11540	MALATE AND LACTATE DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006108	Biological Process	malate metabolic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016615	Molecular Function	malate dehydrogenase activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0019752	Biological Process	carboxylic acid metabolic process	Interproscan
GO:0030060	Molecular Function	L-malate dehydrogenase (NAD+) activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00026	MDH2; malate dehydrogenase	EC:1.1.1.37	Carbon metabolism	ko01200	PMID: 28812709
			Citrate cycle (TCA cycle)	ko00020	PMID: 28812709
			Pyruvate metabolism	ko00620	PMID: 28812709
			Glyoxylate and dicarboxylate metabolism	ko00630	PMID: 28812709
			Carbon fixation in photosynthetic organisms	ko00710	PMID: 28812709
			Cysteine and methionine metabolism	ko00270	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_21273-6.13 global RNA-seq network