Gene detail

Detailed information of Bpl_scaf_20595-1.22 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_20595-1.22	TUFTELIN-INTERACTING PROTEIN 11-RELATED	Bpl_scaf_20595	85753	117284	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_20595-1.22

ATGTCTTCACCAGAAGTTGAACGATTTGAAGTGACAGAAGATGATTTGGCCAACGAATTTTATCCAAGAGGGGGAAGAAGACAGACTAAGAATCAGGCTATATATGGTATGTGGGCTGATGACGATAGTGATGATGAACGACCTAGTTTTGGAAGGTCCAACAGACGGAAGAAAGATATGACTGCCCCGATAGGCTTCATCAGTGGAGGATTTAAACAGGAAGATAAAGTGACGAAAAAAGAGGAAGAAGAAGAACCTGAGTTTACAGATTCTGACAGTGACGAGAGTGTTCCTGTACCAAGACAAAGAAGACCTAAGCCTGGTGGTTATCGTGGTCAAAAAGACCCATCTAAAGAATTTGGTGGATGGGAAAGATATACAAAAGGTATTGGTCAGAAACTGTTACAAAAGATGGGTTATGAATCAGGTAAAGGTCTTGGTAAAAACAAACAAGGAATAACTCAACCAGTGGAGGCTAAGCTACGTAAAGGAAGAGCTGCTGTAGGAGCCTATGGATCAGAGAGAACACAGAGGTCATTACAAGATTACCCTGTCTATGACTCAGAGGAAGAGGAAGATAAACAATTTAAAAATCAACTTCATCAGTGGAAGAAGAAATCAGAGGGTCCAGTTGCAAAGAAAAAACCAAAGTATGTTTACAAAACTGCCCAAGAACTTATAGATACTGGAGGTCAGATGAAAAAGACTCTGCCAAATAGGTCATCAAAGGTCAAGGTTATTGACATGACAGGAAAAGAACAAAAGGTTATGACAGGTTACCATTCAATATCTCAGAGACATGATAGACCAGAAGAAGATGAAGACATAATAACACCAGAACCCACCAAGAAGAAAGCGTTCGCAATGCCAGAACTTATACATAATCTTAATATACTAGTAGACATGGCTGAGGAGGAAATAATACTCAATGACAGGAAATTGAGATATGAAAGTGATCACATTGTTAACATGAGACATGAGAAAGAAACACTGGATACAGTTTGTGAACAGGAGGAAAAGCAACTGAAGAAATTACAGAAAGTTATGGAAATAGTTGACACATGTGAAGAGAGGACGAGACCAGGTTGTGATAATCCATTATCTTTATCAGAATGTGCCAAGATATTTAAATGTCTACAAGATGATTTTTATGAAGAATACAAGATGTATGACTTGGCTTCATTGTCTGTAGCTCTTGTTTTCCCTATGGTCAAAGATTATTTTAAAGACTGGGAGCCTTGGAAGAACCCGTCACATGGTGTTACAACTGTTAAAGAATGGCAATATATATTAGAAGATTATAACAACAAATACAATACAAGTCTAAATAATATGAATGTATTCCAGAGACTATTATGGGATATCTGGTTGCCATTTGTTAGGACGGCCATTTTAAAATGGAACCCAAGAAACTTTGACCCACCGATTGAGTTATTAGAGACTTGGAAACCAGTGTTACCACCTTGGATGATGGAAAACATTTTAGATCAACTGGTTCTTCCTCGGCTGTTACAAGAAGTAGAAAACTGGAACCCGTTGACTGATCCTGTGCCACTTCACTCCTGGTTACACCCGTGGCTTCCTCTCATGGGAGACAAACTGGAGCCCTGTTATCCTCCTATAAGACATAAACTTGCAAGTGCTCTAACAAACTGGCATCCATCGGACAGTTCTGCTAAAGTCATACTACAGCCGTGGATAAAGGTGTTTAAACAAGGTCACACAGAAGCTTTCCTCGTCAAGCATATTTTACCTAAACTGGGAATGTGTATGCAGGAATTTGTTATCAATCCACAACAGCAGGTTCTAGATCCATGGCATTGGGTTATGTCTTGGAGTGACTTGATTCCTATAAAACACATGTATTCTATGTTAGAAAAGACATTTTTTCCCAAGTGGTTACAAGTTCTGTGTACCTGGATGTCTAACATGCCTAACTATGATGAGATTACTAAGTGGTATTTAGGATGGAAGTCATTGTTCTCAGAAGAATATAGGAATTTCCCACCTATTACAGATCATTTTAAGAAAGCTCTAGAGTTGATGAACAGGGCAGTAAGTGGACATTTCCAGCCAGGAGTCAAGGAAAATATTGCTTATTTTACACACACTGAAAGACGGCAGATGATGGATAGCCAACCACCACCAAAACCACCAACCATAAAAGCCGAACCAGATTATACGTCTGTTAGAAGTTCTAGTCCAAGTACATCATATTCCTCAAATTTCAAGGGTCTGGTGGAGAGACTGGCAGAAGAAAACAATGTTTTGTTTATGCCAATTGCTGGGAAAACACAAGAAGCCAAACAAGTGTACAAGTGTGGAAAATATCAAGTTTATGTGGATAGAAATGTTTTATTTATGTTTGAAAATGAACAGTGGATTCCAATATCAATACAGAAGATGATTGACAAGGCCAAAGATTCATAG

Transcript

Bpl_scaf_20595-1.22

ATTTTATTTTTATCACCCTGTTTTTATTTACATGTTGGCTTCTATCATTGCACACCAAAGTCGTCCAAATTACATTTCACAAGTTGTTCACTAGCTTCGAGGTTGTTGATCACAAGTCATGTCTTCACCAGAAGTTGAACGATTTGAAGTGACAGAAGATGATTTGGCCAACGAATTTTATCCAAGAGGGGGAAGAAGACAGACTAAGAATCAGGCTATATATGGTATGTGGGCTGATGACGATAGTGATGATGAACGACCTAGTTTTGGAAGGTCCAACAGACGGAAGAAAGATATGACTGCCCCGATAGGCTTCATCAGTGGAGGATTTAAACAGGAAGATAAAGTGACGAAAAAAGAGGAAGAAGAAGAACCTGAGTTTACAGATTCTGACAGTGACGAGAGTGTTCCTGTACCAAGACAAAGAAGACCTAAGCCTGGTGGTTATCGTGGTCAAAAAGACCCATCTAAAGAATTTGGTGGATGGGAAAGATATACAAAAGGTATTGGTCAGAAACTGTTACAAAAGATGGGTTATGAATCAGGTAAAGGTCTTGGTAAAAACAAACAAGGAATAACTCAACCAGTGGAGGCTAAGCTACGTAAAGGAAGAGCTGCTGTAGGAGCCTATGGATCAGAGAGAACACAGAGGTCATTACAAGATTACCCTGTCTATGACTCAGAGGAAGAGGAAGATAAACAATTTAAAAATCAACTTCATCAGTGGAAGAAGAAATCAGAGGGTCCAGTTGCAAAGAAAAAACCAAAGTATGTTTACAAAACTGCCCAAGAACTTATAGATACTGGAGGTCAGATGAAAAAGACTCTGCCAAATAGGTCATCAAAGGTCAAGGTTATTGACATGACAGGAAAAGAACAAAAGGTTATGACAGGTTACCATTCAATATCTCAGAGACATGATAGACCAGAAGAAGATGAAGACATAATAACACCAGAACCCACCAAGAAGAAAGCGTTCGCAATGCCAGAACTTATACATAATCTTAATATACTAGTAGACATGGCTGAGGAGGAAATAATACTCAATGACAGGAAATTGAGATATGAAAGTGATCACATTGTTAACATGAGACATGAGAAAGAAACACTGGATACAGTTTGTGAACAGGAGGAAAAGCAACTGAAGAAATTACAGAAAGTTATGGAAATAGTTGACACATGTGAAGAGAGGACGAGACCAGGTTGTGATAATCCATTATCTTTATCAGAATGTGCCAAGATATTTAAATGTCTACAAGATGATTTTTATGAAGAATACAAGATGTATGACTTGGCTTCATTGTCTGTAGCTCTTGTTTTCCCTATGGTCAAAGATTATTTTAAAGACTGGGAGCCTTGGAAGAACCCGTCACATGGTGTTACAACTGTTAAAGAATGGCAATATATATTAGAAGATTATAACAACAAATACAATACAAGTCTAAATAATATGAATGTATTCCAGAGACTATTATGGGATATCTGGTTGCCATTTGTTAGGACGGCCATTTTAAAATGGAACCCAAGAAACTTTGACCCACCGATTGAGTTATTAGAGACTTGGAAACCAGTGTTACCACCTTGGATGATGGAAAACATTTTAGATCAACTGGTTCTTCCTCGGCTGTTACAAGAAGTAGAAAACTGGAACCCGTTGACTGATCCTGTGCCACTTCACTCCTGGTTACACCCGTGGCTTCCTCTCATGGGAGACAAACTGGAGCCCTGTTATCCTCCTATAAGACATAAACTTGCAAGTGCTCTAACAAACTGGCATCCATCGGACAGTTCTGCTAAAGTCATACTACAGCCGTGGATAAAGGTGTTTAAACAAGGTCACACAGAAGCTTTCCTCGTCAAGCATATTTTACCTAAACTGGGAATGTGTATGCAGGAATTTGTTATCAATCCACAACAGCAGGTTCTAGATCCATGGCATTGGGTTATGTCTTGGAGTGACTTGATTCCTATAAAACACATGTATTCTATGTTAGAAAAGACATTTTTTCCCAAGTGGTTACAAGTTCTGTGTACCTGGATGTCTAACATGCCTAACTATGATGAGATTACTAAGTGGTATTTAGGATGGAAGTCATTGTTCTCAGAAGAATATAGGAATTTCCCACCTATTACAGATCATTTTAAGAAAGCTCTAGAGTTGATGAACAGGGCAGTAAGTGGACATTTCCAGCCAGGAGTCAAGGAAAATATTGCTTATTTTACACACACTGAAAGACGGCAGATGATGGATAGCCAACCACCACCAAAACCACCAACCATAAAAGCCGAACCAGATTATACGTCTGTTAGAAGTTCTAGTCCAAGTACATCATATTCCTCAAATTTCAAGGGTCTGGTGGAGAGACTGGCAGAAGAAAACAATGTTTTGTTTATGCCAATTGCTGGGAAAACACAAGAAGCCAAACAAGTGTACAAGTGTGGAAAATATCAAGTTTATGTGGATAGAAATGTTTTATTTATGTTTGAAAATGAACAGTGGATTCCAATATCAATACAGAAGATGATTGACAAGGCCAAAGATTCATAGCATTCACAAAGCCAAGGAATCATAACATTCACAAAGCCAAGGACTCATAACATT

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	GCFC

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01585	G-patch	G-patch domain	Family	Interproscan
PF07842	GCFC	GC-rich sequence DNA-binding factor-like protein	Family	Interproscan
PF12457	TIP_N	Tuftelin interacting protein N terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000467	Domain	G-patch domain	Interproscan
IPR022159	Domain	Tuftelin interacting protein, N-terminal domain	Interproscan
IPR022783	Domain	GCF, C-terminal	Interproscan
IPR024933	Family	Septin and tuftelin interacting protein	Interproscan
IPR045211	Family	TFP11/STIP/Ntr1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23329	TUFTELIN-INTERACTING PROTEIN 11-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000390	Biological Process	spliceosomal complex disassembly	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0071008	Cellular Component	U2-type post-mRNA release spliceosomal complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13103	TFIP11; tuftelin-interacting protein 11	-	Spliceosome	ko03041	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_20595-1.22 global RNA-seq network