Detailed information of Bpl_scaf_20339-1.14 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_20339-1.14TRANSCRIPTION ELONGATION FACTOR SPT6Bpl_scaf_2033965264121265+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00575S1S1 RNA binding domainDomainInterproscan
PF14632SPT6_acidicAcidic N-terminal SPT6FamilyInterproscan
PF14633SH2_2SH2 domainDomainInterproscan
PF14639YqgFHolliday-junction resolvase-like of SPT6 DomainInterproscan
PF14641HTH_44Helix-turn-helix DNA-binding domain of SPT6DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR003029DomainS1 domainInterproscan
IPR006641DomainYqgF/RNase H-like domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR017072FamilyTranscription elongation factor Spt6Interproscan
IPR023319Homologous_superfamilyTex-like protein, HTH domain superfamilyInterproscan
IPR023323Homologous_superfamilyTex-like domain superfamilyInterproscan
IPR028083DomainSpt6 acidic, N-terminal domainInterproscan
IPR028088DomainHelix-turn-helix DNA-binding domain of Spt6Interproscan
IPR028231DomainTranscription elongation factor Spt6, YqgF domainInterproscan
IPR035018DomainSpt6, SH2 domain, C terminusInterproscan
IPR035420DomainSpt6, SH2 domainInterproscan
IPR036860Homologous_superfamilySH2 domain superfamilyInterproscan
IPR037027Homologous_superfamilyYqgF/RNase H-like domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10145TRANSCRIPTION ELONGATION FACTOR SPT6Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan
GO:0006368Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0008023Cellular Componenttranscription elongation factor complexInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan
GO:0034728Biological Processnucleosome organizationInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0140673Biological Processtranscription elongation-coupled chromatin remodelingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11292SUPT6H, SPT6; transcription elongation factor SPT6-Transcription machineryko03021PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_20339-1.14 global RNA-seq network
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