Gene detail

Detailed information of Bpl_scaf_20076-2.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_20076-2.13	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Bpl_scaf_20076	145129	197138	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_20076-2.13

TGGCGTTGTTATCTCGGCAGCCATATTTTCAAGGAAGACAGCACGAAGAAATTGTCTGACAAAATATCATATAACCCAAAGCCGTTAAGGCTGTTCTTGTTGTCTAGGCTTGCTACATAAGATGCCAAAATGTTTCCAATTCCAGGTATATCCAGTATTATGAACCAACAACTCAATGGTCAAACATCAATACCGTTTACACCATTTCCACCAATACAACCTGAAGTACAACCACCCCAGATTCCTCCTCCTCAGACACCACAGCCTGTAGTACCAAGAGCAGATTTTATCTCGCCTGCTAGACCAAACCATGGCACAGATGGCAAACCAATCTTACTGAGGGCCAATCACTTCCAAGTCCGCATACCAAAAGGAGTCATTCACCATTATGACATTGCCATTACACCAGATAAATGTCCACGACGTGTCAACAGAGAGATCGTTGAGACTATGGTCACAGCTTACAGTCAGAAGATTTTTAGTGGACAGAAGCCTGTATTTGACGGGAGGAAGAATCTGTACAGTAGGGATCCACTACCTATTGGCAGAGAAAGGGTTGAATTAGAAGTCACACTGCCCGGTGAGGGCAAAGATAGGGTTTTCAAAGTGGCAATAAAGTGGGTTGCCCAAGTTTGCCTGTTTTCCCTCGAGGAAGCAATGGAAGGCAATTCCAGGCAGATTCCATTTGAAGCCATACAAGCCCTGGATGTGGTCATGCGCCATTTACCGAGCATGAACTACACGCCAGTTGGTAGATCTTTTTTCTCACCTCCAGAAGGTTATGACCATCCCTTGGGTGGAGGTAGAGAAGTCTGGTTTGGTTTTCATCAGAGTGTACGACCTTCACACTGGAAGATGATGCTGAATATTGATGTTTCGGCAACAGCTTTCTACAAGGCTCAGCCTGTCATAGAGTTCATGTGTGAAGTGTTGGATATTAAAGATGTACATGAACAAAAACGACCTTTGACAGATTCTCAGAGGGTCAAGTTCACGAAAGAGATCAAGGGTCTCAAAGTGGAGATAACTCACTGTGGCACGATGAGGAGGAAGTACAGAGTTTGTAATGTAACACGACGTCCTGCTCAGACGCAGTCTTTCCCTCTACAGTTAGAATCTGGTCAGACAGTAGAGTGTACTGTAGCCAGATATTTTCTGGAGAGATACAAGATGAAGTTACAATATCCACATCTTCCCTGTCTACAAGTCGGACAGGAACAGAAGCACACATACTTACCATTAGAGGTGTGCAATATAGTGGGAGGACAGAGATGTATAAAGAAGTTAACAGACATGCAGACATCGACTATGATCAAGGCTACAGCAAGGTCAGCTCCAGATAGAGAAAAAGAAATTAACAACCTGGTACAAAAAGCAGACTTCAACAAAGACCCGTACCTACAAACGTTTGGTATCAGTGTCTCCTACCAAATGACTGAAGTCAGAGGGCGAGTGCTGCCCCCACCAAGAATAGAATACGGAGGCAGGATAAAATCGGCTGCAGTCCCCAATCAGGGTGTATGGGATATGAGGGGCAAACAGTTCTACTCTGGAATAGAGATAAAGGTGTGGGCCATTGCCTGCTTTGCACCTCAGAGGACTGTAAGAGAGGATGCTTTAAGAAACTTTACACAACAGCTACAGAGAATATCAAATGATGCTGGCATGCCAATCCTCGGCCAACCATGTTTCTGTAAATATGCCACAGGACCAGACCAAGTAGAACCAATGTTCCGTTACCTGAAGAACACCTACCAGGGACTTCAACTGATTGTTGTAGTTCTACCTGGTAAAACACCTGTGTATGCTGAAGTCAAGAGAGTTGGTGATATATTATTTGGTTTGGCTACACAGTGTGTACAGGCCAAGAATGTAAATAAAACCACGCCACAGACCCTGTCTAATCTCTGTCTGAAAATCAACGTTAAACTCGGTGGAATTAATAATATATTGTTGCCTAGTATTAGGCCTGCAGTATTTAAAGAATCTCTTGATCTCCTTGTTCCTGACATGTCAAACAAACCCTTCTACTCTGTAAATAATAATAAACATTTGATACATGCATGTTGTCGGAAGTATGGACGCCCATCCTAGTCGTTATTCTGCCACTGTACGTGTACAACAACATAGACAGGAAATCATACAAGAGTTATCTTCCATGGTTCGGGAACTGCTCATCCAGTTTTACAAGGCCACACGATTTAAACCTACAAGAATTATATTCTATAGGGATGGAGTTAGTGAAGGACAATTTCAACAGGTGCTATACCATGAATTACGGGCAGTCAGAGAAGCCTGTATGAAGTTAGAGATAGGATACCAGCCAGGTATTACATTTATAGTGGTACAGAAACGTCATCACACCCGACTATTCTGTGCCGACAGAAAGGACCAAATCGGTAGAAGCGGTAACATTCCAGCAGGAACGACAGTGGATGTCGGAATCACACATCCGACTGAATTTGACTTCTACCTGTGTAGTCACGCTGGAATACAGGGTACCAGTCGTCCTTCACATTATCATGTACTGTGGGATGACAACAGATTTAATGCAGATGAACTACAAATGTTGACCTACCAGTTGTGTCACACATATGTCAGGTGTACCAGGAGTGTATCCATTCCTGCTCCAGCTTATTATGCACATCTTGTGGCCTTCAGAGCACGTTATCATCTAGTCGAGAAAGAACATGACAGGTATGGTACAATTTTTAGCTGGCCAGAACGAATGGAGAGGGGAGTCGTCATTCTGACAACAGTGAAGATAGAACTCCATCAGCAATGGCAAGAGCAGTCACAGTTCATCCAGATACCACAAAAGTCATGTACTTTGCATAGTACCACAAAGATCCTTTAATATTCATAGGGCATTTATGTACAGTACAATACAAGTACTGAATGAGACATTGTTATCAACATGATGAAATGGAAAGTAGAAAAAAAATGGAATCTAAAAATAGAACACAATTTAAGGATCATATTTCATTTGTACAAATGAAAATCCATTATATGTTTAATATTTATTAATTGTTGATACTATTTATAAGGCCGGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02170	PAZ	PAZ domain	Domain	Interproscan
PF02171	Piwi	Piwi domain	Family	Interproscan
PF08699	ArgoL1	Argonaute linker 1 domain	Domain	Interproscan
PF16486	ArgoN	N-terminal domain of argonaute	Domain	Interproscan
PF16487	ArgoMid	Mid domain of argonaute	Domain	Interproscan
PF16488	ArgoL2	Argonaute linker 2 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003100	Domain	PAZ domain	Interproscan
IPR003165	Domain	Piwi domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR014811	Domain	Argonaute, linker 1 domain	Interproscan
IPR032472	Domain	Argonaute linker 2 domain	Interproscan
IPR032473	Domain	Protein argonaute, Mid domain	Interproscan
IPR032474	Domain	Protein argonaute, N-terminal	Interproscan
IPR036085	Homologous_superfamily	PAZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016246	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0035198	Molecular Function	miRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11593	ELF2C, AGO; eukaryotic translation initiation factor 2C	-	Axon regeneration	ko04361	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_20076-2.13 global RNA-seq network