Gene detail

Detailed information of Bpl_scaf_19778-0.19 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_19778-0.19	THUMP DOMAIN-CONTAINING	Bpl_scaf_19778	25349	49979	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_19778-0.19

ATGAGTCACGATTTGATAACGGGAAAAACCGTTATTGTTACAGATGGAAAAATTTACTTTGAAGCCAACTTATCTAAATATAATCAGATTGCCAACTTGAAATCAGTGGAGAGGGTGTTTATATGTATTTTAAGAGCAGACAGAAACACTTTACCAGGGGTGTCTCTTTGGGATATAAAAAAGGTAATTGTCAGAAATGATTTGTGGCTACATGAAACCATTCAGTCTGCCCTAGAAGTCGTCCTTAAAGATAGAAGGTCAAAGGGCAATACAACTGATGTCAGTTCAACTAGGAAAGAGGTCAATACAGCTGGGTTGGATATCAATGTAGATAGGTCAGAGGTCATTTTACCTAAGACTGAAGAAGAGGAGAGATCTAAGGATGAATGTGAACCACCAGTGAACAAAGTGCCTAGGCTAATGAGTAAGCTGAGATTTAGAATGATATGTCGTTGTACAGGAAGAATAGGAAGAAAAATAGATCCAATGACTCTTCAAAGAGATTTAGGAGTGGGAATGAAGAAATTAATGGATTGGAAAGTTGACCTAAGGTCACCAGACATAGAGATAAGTGTACATGTCAGTGATGATGGTCTTGTTGTAGGAATTCCAATTACAAGGGAACCACTGTCAAAGAGATGTTACATACAAGAGTATGGTTTAAGATCTACAGTAGCTTATATAATGTCTAGTTTACTACCACTTAAGACAGGTGATATAGTCTTAGATCCTATGTGTGGAAAGGCAACCATTTTAGTGGAGTCTGCATATGAGAATAAGACAGTATCATATCTTGGCTGTGACAAAGATTTGAAGCAACTGACGTCTGCTACAAACAATTTAAGATTTGCCAATTTGACCAACGTTCATCTTTTCCAGGGAAACACAAAAGATTTACCATTACCGTCTTGTTCTGTTGACCACATTGTTTGTGATGCTCCTTTTGGAAATAAACATATTGTTGATGTTGATCTAGAAGAATTTTACAGACTTATACTTACTGAATTTACAAGGGTTTTGAAGCCAGAGGGGCACATAGTTCTCCTAACTAGTCAAGACATACATCTGTATATTTCAAAGATATTCCAAAAAGGAGTTAATACAGATTCTTACAAAGATCAACAACATATTACTGATAGGAAGGGAGATAACTCAGTAGATAGCAATCCTGAGGATGGAAAGGTGTTGAATGTTTCTAATAACTCTGAAAGTGAAAGCAACAACAAGGTGTACAATTCATATTCTACTATTGACAACCTAAATAATCCATGTATAAATCAAAATGTTGTCGAAAGTACAAAATATCTTTTAAAATCTGCTTCTTGTAAAGAACATTGTGAAAATGCAGAAAAGGAAACGGTTTCTATGCCATTTACTAAACTGAAGAATGATGACAATATTTTAGAACAAATAACATTGATAGAAAATGTGGCACATGAGGAAGGACTGGGGAGACCTAGAGTTGGAGGATTTGACCCAGATACCCACTTAAGGGTCACCCCACAATTTTTGGACCTGATAGAATTCTCCTCTGAGGGGGGGTCAAGAGCAGTCCACCCGGGGGAGGAGGTCGAAAATGAAGGGGACCCGATTGAAGCCCATTTTGAGAGGTTAAGAAAGGTGGGCAAACTAGTCAATACCAGGCCAGGGCCCAAAGGAGGGGAACAGCCTATCCTAGGGGATACACAGGACCCCCAAAGGTGTAGGTCAACCAGAACCCCAGGTGATGTTAAGGAGAGATGGTCAAGGTCTCCCTTACCCTGGCTAAGGGGTATGGATAGATTGAGCCTAGAGGAGGGGTATGGCGAAATGGAATCGGCATTCCTGGAGGGGGCCACGCCACACCCCAGGGCAATAGATAGTCCATACTGGGAGACCCCAAGGAGGGGTGGTGATACCAGCACTGGTCCCGGGGAGGGAAGATCGAGGCCCGGTGGTGGGGATAGAGCCAGGAGGGACTCTTACGAGTCAAGGCGGACACCTAGGGGGTCCAGAATGGACTATGGCTCATATTACGAGAACCCGGGCGCCCCAACCAATCCCTGGGAACAAAAAGAGGAACACAGGGGTGAACGAACAAGGAGTTCAGAGTCCTTGGAAACCAGAGTTGAGGCCAAGGTTGAGGGGCTTGAGGGGAAAATGGCCCAGGGATTCAGGGAGCTGACCCAACTACTCACAAGCCAAAGGGCAGAGAATAGGCTGACACCACGCAGCTCATCCCCAAGGGGGCCCGGAGAGGGGTGTTACCACTGCGGATCTTCCAGTCACTTTAAGAGGGACTGCCCCAAGTTAACTGGTGCACGGAGCCCGTCCCCAGCATTGTGGATTGTCGACCCATCTTAA

Transcript

Bpl_scaf_19778-0.19

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01170	UPF0020	Putative RNA methylase family UPF0020	Domain	Interproscan
PF02926	THUMP	THUMP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000241	Domain	Ribosomal RNA large subunit methyltransferase K/L-like, methyltransferase domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR004114	Domain	THUMP domain	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14911	THUMP DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016423	Molecular Function	tRNA (guanine) methyltransferase activity	Interproscan
GO:0030488	Biological Process	tRNA methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_19778-0.19 global RNA-seq network