Gene detail

Detailed information of Bpl_scaf_19139-1.12 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_19139-1.12	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Bpl_scaf_19139	106639	140974	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_19139-1.12

GAATATTTTCGTGTTGATTCTATCTTTCTATTTCAGACATTTTCTGCTTTAGAGGAAGACTATATTAAAGACTTTATAAAATCAAGAAAGCTTCGAGAAGCTGGATTCAATGAGTTTGATTTGACATCAATTCAAGAAACTTCAAGCAAGAACAGATTAAGCCTTGACGCAGCGTCGATACACCGACGTCGAAGATCAACAGAAGAATTGGACCACTATGATGTAGTAATTAATGGTTTTGGTGAATCATATAGAATGACTTTACAACACACTACATCTGTCTTACATCCTTCAGCAAAAATACTGACAATAGATGATGACGTGGAGACCAAATGGCAAGGAGAACATCCAAATTGTTTTCTGACGGGTGATGCTGGTATTATGGCAACAGATAAACATGAACTACACTTTGAAGTTCTTCCACATCATATACGTCGACGAAGTACACTAAAACAACTGAAACATACAGCATTGGTAGCTAGGAAGATACAAGATCCTTCAAAGTTATCTAGTTTGAAGTTAGACAATGATTATGTAAATATAGTTAACGGAGAAAGAAATTATCATAAAAGACAAAAGCGATCTGTACCTTCTACAAGTTTTACTATAGAAATGGCAGTATATTGTGATGCAGATTTTATGACTAATGATCTTCCTCCTACTTCTACCAGTGACAGAGTAACAGCTATGTTAGTCAAGTATAATGCAGTTGCATTCGAGTGGGGACGTTCTGATGTCTTAGGGTACAATATTACACTCTCTCTCAAACTGTTGACATTCTATGACACAAATCCGTCATGGTATAATACATCAACGGATCTTGGAGTACCATTGGGATCAATTTGTGCAGGAACACAGAATGTTTTGGCCTACGATCATATCCATCTTCATACAGGTGTGAAGAACCCGGCTTTGGGTGGTGTTGCTTTTCAGAGTAAAGTTTGTAATGTCGCCTATAGATGTGGGGTATCAGCAGATAGTGTCACTACCTATGTTGCAACGGCACATGGATTAGGGCACAACATGGGAATGTTACATGACAGCGATCGCGGTTGTACCTCTCCGAATGTTGGTACCATGGGAGGTGCTGGTGTTGGGTGGAGTACATGCAGTGTAAATGATATGGATGCCATGCTTCAAACGGGAAACCACAACTGTTTATGGGAAGATAACATTTCAGATAACGAAATCGATCCAGTTGAATTAAAAACTATTACTTTAGAACCCAGCCTACCAGGTCAACACCTTACAAATGATGAGATTTGTGAGAAAATGTACGGCAGTGGATTCCAATATAGAGAATTCCCACAAGTAGTGCAAATGATTTGTAGCTTATATAGCTGTGTTGATCTAAATACCAACCAGGGTAGTGTAAAGACGTATGGTCGTATGTATAAACAAAACGACTCAATTACTGGAAGTTACTGTGCAGATAATAAGATTTGTTTGGATGGATCATGCCAACCTTGGTCAGCAGCACAACTAACAAATCCTGAAGTTCGTGCAGGAGGATGGTCAGACTGGGGATCATGGACTACATGTTCAAGAACATGTGGACGTGGTATGTCATTTAGGAAGAGGAAATGTGACAATCCAACGCCAAAGAACCATGCGCCATGTGAGGGAAATGAACATGATGTAGCAGGATGTAACCTAACACCATGTGCAGGGGACAGTCCCAAAGACTCAGAATTGATAAAACAAAGGGCAACTGAGACATGTGCATATCTTATCAATAACAACATTATAAATGGAACACTGTATAAAACTGAGGGACAAATATACTCATCACTTAATCATGGAGTATGTGAAGTAGATTGTGCAGCTGTTGATGGTCATACCACCCCATTCCTCACAAGGTTTGGTTTGATGGAGCATGGAACACCATGTCCAGGAACATTAGATAATCCAGACTCTCGTGACTATCCACGACGCGCGGGATTTTATTGGGCTTGCTTAGAAGGATATTGTCGGAAATTTGATTGTGCTAACACTTTAAATACTAATGTTTATGATGGCTGTGGTGTGTGTAACGGTAATAATGATACATGTGTGATTCGCACAGGAACAATGAGTGACGCCATA

Transcript

Bpl_scaf_19139-1.12

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF01421	Reprolysin	Reprolysin (M12B) family zinc metalloprotease	Domain	Interproscan
PF19236	ADAMTS_CR_3	ADAMTS cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR001590	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan
IPR013273	Family	ADAMTS/ADAMTS-like	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR045371	Domain	ADAMTS/ADAMTS-like, cysteine-rich domain 3	Interproscan
IPR050439	Family	ADAMTS and ADAMTS-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13723	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08628	ADAMTS14; a disintegrin and metalloproteinase with thrombospondin motifs 14	EC:3.4.24.-	Peptidases and inhibitors	ko01002	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_19139-1.12 global RNA-seq network