Gene detail

Detailed information of Bpl_scaf_19010-10.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_19010-10.6	RING FINGER AND KH DOMAIN CONTAINING PROTEIN 1	Bpl_scaf_19010	1005728	1016512	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_19010-10.6

TGCTTTTGTACATCGCGAATAAAAATAGCAGACAGTTCGGTATTTGCTCTCAGCAACTGAGGTACTGATAAACAAAGAACCTAGTGCATTACATGGAATATATATAAATTTTCTATTTTTATACATTGTTATATTGGATATTTTATAATTTTTCACAATGCCAGCGAATTTATTCACAGAGACTTTGCCCGTAAACACTAATTTAGAGGATCAACGCGCACTGCACTTGGCTTTTGAGCTTTCAATGCTTGGATTAGATGAAGATAGTGGCTCTAATGTGAATGCTATTAGTGATGCTGATGCGGAGATTCTGAGGAAAAACAACGCTAATGGCGCAAATATGACTGAATGTGTACCAGTTCCAAGTTCAGAGCATGTAGCAGAAATAGTCGGAAGACAAGGTTGCAAGATCAAAGCCTTGAGAGCCAAGACCAATACTTACATTAAGACACCAGTTCGGGGTGAGGAACCAGTTTTTGTTGTAACGGGAAGGAAAGAGGATGTCTGCCTTGCGAAGAGAGAGATCCTGTCTGCAGCAGAGCATTTCAGCCAGATTCGTGCATCTCGCCGAAACAGCAGCGTGTCGAGCAATGGTTCAGTAATGGGACCTCCAAGTCCCAGTGCACCAGGACAAGTAACAATTCAGGTGCGTGTTCCGTACAAAGTAGTTGGGTTAGTTGTCGGCCCCAAAGGAGCTACAATTAAGAGAATTCAGCAGCAGACCCATACGTACATCGTTACACCAAGTCGGGACAAGGAGCCAGTTTTCGAGGTTACAGGACTTCCAGAAAATGTTGACAAAGCTAAAATTGAGATTGAGAGCCACATTGCTATTCGTACAGGTGGTCAGGTAGAAGGGCAAGACGACGACTTCCACAGTAATGGCGTGGATTCTGGATTTCATGAGCTAAACGGCAACTCTTTCGTTAATTACAATAAGAATCTTAATGGATACAGTTCTTTTACTGACTTTCACAACAATTTGAATGGTAGCAAATTAATGTCACAACGTAACTTTGAAACATCTGTCTTCAACTTTCCACCAATTTCCAAAATATCTGACTTTGCACCTCTCACTATGAACACAGGATTCAATGGTTTCGGTATGTACGACAACGACGAAGGTATTGGAGGTTCTCCGCAGTTTGACCAAGTACCTCCTTCTACATCTATCTGGCCAGATGCTCTGACTGGTTTAGGAGGCCCTACATTCCCCCGGCGTGGTAGCAGTTTAGGAAGTGCAGCATCGCAGCACAGCTTGTCGCCGCCTCTCACTGACTCCAACAGCCAATCAAGTGGTCAGAATTCTCCACCTTCACCTGCGTCAGATCTTCTAGTCCGTCAAATCAATGGCGAATTCATGCCTAAGATAACCACAGTCTCAACAGCATTTGGAAATATTGCAACAACTGCTAGCTGCGTTCCTACCTCTTGTGAACATGCAGATATCCTGCCCAGCGATAGTATTAGTGCTTCTATTATAAGTAGCGTGGTGGACTCGTCAAAGTCGATTGGAGGCGTTTCCTGTCCCGTCAAAGTCCCTACGCTGAATGGTCAGCCACATCGTCATTGTCTAATGTGTTCAGAAAGTGACATTGTTGCAGCTCTGGTACCGTGCGGGCACAACTTGTTTTGCATGGAATGCGCAAGTTTGATTGTGGAGAAGCCAGTCTTAGACCGACTGTGTCCTGTTTGTCACCAAACACCTACTCAGGCTATCCGCATATTTTCATAACAGATACAAGAATTTTTTTTGTCATTTCATCTTCATCTTTTTCTGCATTGAACAATCTGACATTATGAGATTAAGTTATTAATACATATGAAATGAATATTATTTATGATATAGAAATGTTACATAGTGTACATTGTATCATGAATGTACACACATTATAATCTGCAACAAGTGTTACAATCATTCATATCATTCCATTGAAAATGGGGAGGGGAGGGGATGTTAGGGGGGGTCATTGACATCAAGGTCAGATGGGAATTGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013	KH_1	KH domain	Domain	Interproscan
PF13920	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR004087	Domain	K Homology domain	Interproscan
IPR004088	Domain	K Homology domain, type 1	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR047226	Domain	RNA-binding protein MEX-3, second type I KH domain	Interproscan
IPR047227	Family	RNA-binding protein MEX3	Interproscan
IPR047228	Domain	RNA-binding protein MEX-3, first type I KH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23285	RING FINGER AND KH DOMAIN CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15686	MEX3, RKHD; RNA-binding protein MEX3	EC:2.3.2.27	Messenger RNA biogenesis	ko03019	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_19010-10.6 global RNA-seq network