Detailed information of Bpl_scaf_1893-1.12 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_1893-1.12ATP-DEPENDENT RNA HELICASEBpl_scaf_189397683132356+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00575S1S1 RNA binding domainDomainInterproscan
PF01926MMR_HSR150S ribosome-binding GTPaseFamilyInterproscan
PF04408HA2_NHelicase associated domain (HA2), winged-helixDomainInterproscan
PF21010HA2_CHelicase associated domain (HA2), ratchet-likeDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR002464Conserved_siteDNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteInterproscan
IPR003029DomainS1 domainInterproscan
IPR006073DomainGTP binding domainInterproscan
IPR007502DomainHelicase-associated domainInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR023179Homologous_superfamilyGTP-binding protein, orthogonal bundle domain superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR044762DomainDHX8/ Prp22, DEXH-box helicase domainInterproscan
IPR048333DomainHelicase associated domain (HA2), winged-helix domainInterproscan
IPR049588DomainDHX8, GH2-like domainInterproscan
IPR049621DomainDHX8 helicase, S1 domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR18934ATP-DEPENDENT RNA HELICASEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000390Biological Processspliceosomal complex disassemblyInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0005622Cellular Componentintracellular anatomical structureInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12818DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22EC:3.6.4.13
Spliceosome ko03040PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_1893-1.12 global RNA-seq network
TOP