| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_1866-2.25 | FORMATE DEHYDROGENASE 1 | Bpl_scaf_1866 | 296818 | 313778 | + |
| CDS | |||||
| Bpl_scaf_1866-2.25 | |||||
| Transcript |
| Bpl_scaf_1866-2.25 |
| Protein |
| Bpl_scaf_1866-2.25 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00389 | 2-Hacid_dh | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | Domain | Interproscan |
| PF02826 | 2-Hacid_dh_C | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Domain | Interproscan |
| PF19304 | PGDH_inter | D-3-phosphoglycerate dehydrogenase intervening domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006139 | Domain | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | Interproscan |
| IPR006140 | Domain | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain | Interproscan |
| IPR006236 | Family | D-3-phosphoglycerate dehydrogenase | Interproscan |
| IPR029009 | Homologous_superfamily | Allosteric substrate binding domain superfamily | Interproscan |
| IPR029752 | Conserved_site | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 | Interproscan |
| IPR036291 | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR045626 | Domain | D-3-phosphoglycerate dehydrogenase, ASB domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42938 | FORMATE DEHYDROGENASE 1 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0004617 | Molecular Function | phosphoglycerate dehydrogenase activity | Interproscan |
| GO:0006564 | Biological Process | L-serine biosynthetic process | Interproscan |
| GO:0016616 | Molecular Function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Interproscan |
| GO:0051287 | Molecular Function | NAD binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K00058 | serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase | EC:1.1.1.95 EC:1.1.1.399 | Carbon metabolism | ko01200 | PMID: 28812709 |
| Biosynthesis of amino acids | ko01230 | PMID: 28812709 | |||
| Methane metabolism | ko00680 | PMID: 28812709 | |||
| Glycine, serine and threonine metabolism | ko00260 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_1866-2.25 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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