Gene detail

Detailed information of Bpl_scaf_18613-11.16 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_18613-11.16	CBF1 INTERACTING COREPRESSOR CIR	Bpl_scaf_18613	1109967	1135488	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_18613-11.16

ATGGGGAAAGGTTTCAACAATTATATGACCAAGAAGTTTTTTCATCCATCTAGTAAAGAAAACATAAAAAGGGTATGGATGGCTCAACAGAAAACAGAATTTGAGAAGAAGAAACAAGAAGATTTATTAAATCAATATCAAAAAGAACAAGAGATGTATCAAAACAGGGCTTTATTGGGAGATGAAAAGGCAAAGCATGGATTAAGTTTTATGTATGATGCACCACCAGGGCTAAAGAAAAAAGAAGATGAGAAAGAACCAGAAACAGAAGTAAAATTTGAATGGCAGAGGAAATATAATGCCCCAAGAGAACAGTATGCTAAAAATGATGATGAAATCCGTGACCAGCCGTTTGGAATTGAAGTTCGTAACGTGCGCTGTATCAAGTGTAGAAAGTGGGGCCATGTAAACACAGATAAGATTTGTCCTCTGTTTAACACAGACTTAACTGCAGAGCCTCCACAGCCTTCTACAAGTGCAGCATCATTGTTAGAAGGAATGAAAGAAGATGGATTTAAATTGAAGCAAAGCATTCTGGGAAGAATGGCAGAAGATCCATCAGCTGAGCATGAGAAATTATTGGACAGTGGTGATGAAGATGATCCTGAGGTCAAGTTTCTCAAGTCATTGTCGGCAAAGCAGAAGAAAAAATTACTCAAGAAACTGAACAGTCTTCAAGCAGGAAAGGGAAAGAAATCAAAGAAAGACAAAAAACAGAAAAAGAAGAAACACAGGTCTTCATCTTTATCATCTGCAGAATCTGAAGAGGATAGTTCAAAGAAAAGAAAAAAGAAAAAGAAGCCAGATTCAGATAGTGAAACAGAGAGTACAAAGAAAAGAAAGAAAAAGAAACATAGTTCTGATTCTGATGATTCATATGATAGGAAACAGACAAAGTCAGTAAAGAAAAGTGATATAAGTAAAGATAGATATAAGGACTCAAGTTCTAAAGAAAGGGGGAAAGGTTCTGACAGAATGACAAGACGTACATCATCAAGTCCTGATAACAGAAGAATGTCACAACACTACAGAGAACAGAAGACAGACATTACATATAACAATAAGAGAAACAGGCACTCTGAATCCACTAGTGATTCTGAAAGTGACCACTACGAAAAACAGCAAAGAAATCATGGAAAATATAAAGATTCAAGAGACAGTGGTAGAACTGTTAAAAATAGGTCAAATAGAAGTAGATCACATTCACCTAATAATAGAAGTAGAAGATCACATGATAGATCTACATCAAGGGATAGATATGAATATTCTAAATCGCACCAAAGTAGGTCAAAGGACAGAGTTCAAAGATCGTCTAGATCTATTGAAAGGAGGTCAAACAAAAAACATGCACGGTCATCTAGGTCAAGAAGTAGATCAGTGGATAGAATGGATAGGTCTAGAAATAGATCTAGGTCAAACGGTGGTAGAAGAAGACGATCATATTCAAGAGATAAATATAGGAGGTCAAGAGACAGTAGTGGGTCATCAACAAGTAGATCAAGGTCAAGGGACCGGGAAAGGTCAGGATTTGTTAGAAGTGTTTGGATCGTAGGGTCATCCATCATACACTGGGCTCACAAGAGGGCATGTCAACTTAGAAACATCAATCTTGGTATGAAAACATCAGATGTCTACATAGAATGGCATGGAACAAGAGGCATGCGATGGAATGCTCTTCTACCTAAACTTACGGAACTTGCCAAGACAAACCGTCCACCAGATGTCCTTATTTTATACGTGGGCTCAAATGATGTTGGTTACGTTAAACCAACAGATTTAGTTAGGATGATTAAAACAGATATGGGAACTATTAAAGAAATGTACCCCGACACAATGCTGATATATAATGAAATTTTATCTAGAATCAACTGGCGAGGTGCACCCAATAATGAGGATGGTGAACACCAACGACTTACAATCAATAAATATGTCAAACCTGTCATAGAATCAATGGGTGGTCTTATGATTCATCATCCCGACATCAGGAATATCAACCACGCATTATACAGAGATGATGGCGTCCATTTAAATGACACTGGATATGATATATTTAATAACAATGTTGGAGACACAATTAGGACCGTTCTTTTAAGATTGAAGATGTAA

Transcript

Bpl_scaf_18613-11.16

AAGACACAATCCAAAATCACTTCCTGTTTTGCAAAACGTCGAATATTGAAAAACGTTTTACTCTTTCGTATTTTGTTTACGTACACTTAAACAGCAACCATGGGGAAAGGTTTCAACAATTATATGACCAAGAAGTTTTTTCATCCATCTAGTAAAGAAAACATAAAAAGGGTATGGATGGCTCAACAGAAAACAGAATTTGAGAAGAAGAAACAAGAAGATTTATTAAATCAATATCAAAAAGAACAAGAGATGTATCAAAACAGGGCTTTATTGGGAGATGAAAAGGCAAAGCATGGATTAAGTTTTATGTATGATGCACCACCAGGGCTAAAGAAAAAAGAAGATGAGAAAGAACCAGAAACAGAAGTAAAATTTGAATGGCAGAGGAAATATAATGCCCCAAGAGAACAGTATGCTAAAAATGATGATGAAATCCGTGACCAGCCGTTTGGAATTGAAGTTCGTAACGTGCGCTGTATCAAGTGTAGAAAGTGGGGCCATGTAAACACAGATAAGATTTGTCCTCTGTTTAACACAGACTTAACTGCAGAGCCTCCACAGCCTTCTACAAGTGCAGCATCATTGTTAGAAGGAATGAAAGAAGATGGATTTAAATTGAAGCAAAGCATTCTGGGAAGAATGGCAGAAGATCCATCAGCTGAGCATGAGAAATTATTGGACAGTGGTGATGAAGATGATCCTGAGGTCAAGTTTCTCAAGTCATTGTCGGCAAAGCAGAAGAAAAAATTACTCAAGAAACTGAACAGTCTTCAAGCAGGAAAGGGAAAGAAATCAAAGAAAGACAAAAAACAGAAAAAGAAGAAACACAGGTCTTCATCTTTATCATCTGCAGAATCTGAAGAGGATAGTTCAAAGAAAAGAAAAAAGAAAAAGAAGCCAGATTCAGATAGTGAAACAGAGAGTACAAAGAAAAGAAAGAAAAAGAAACATAGTTCTGATTCTGATGATTCATATGATAGGAAACAGACAAAGTCAGTAAAGAAAAGTGATATAAGTAAAGATAGATATAAGGACTCAAGTTCTAAAGAAAGGGGGAAAGGTTCTGACAGAATGACAAGACGTACATCATCAAGTCCTGATAACAGAAGAATGTCACAACACTACAGAGAACAGAAGACAGACATTACATATAACAATAAGAGAAACAGGCACTCTGAATCCACTAGTGATTCTGAAAGTGACCACTACGAAAAACAGCAAAGAAATCATGGAAAATATAAAGATTCAAGAGACAGTGGTAGAACTGTTAAAAATAGGTCAAATAGAAGTAGATCACATTCACCTAATAATAGAAGTAGAAGATCACATGATAGATCTACATCAAGGGATAGATATGAATATTCTAAATCGCACCAAAGTAGGTCAAAGGACAGAGTTCAAAGATCGTCTAGATCTATTGAAAGGAGGTCAAACAAAAAACATGCACGGTCATCTAGGTCAAGAAGTAGATCAGTGGATAGAATGGATAGGTCTAGAAATAGATCTAGGTCAAACGGTGGTAGAAGAAGACGATCATATTCAAGAGATAAATATAGGAGGTCAAGAGACAGTAGTGGGTCATCAACAAGTAGATCAAGGTCAAGGGACCGGGAAAGGTCAGGATTTGTTAGAAGTGTTTGGATCGTAGGGTCATCCATCATACACTGGGCTCACAAGAGGGCATGTCAACTTAGAAACATCAATCTTGGTATGAAAACATCAGATGTCTACATAGAATGGCATGGAACAAGAGGCATGCGATGGAATGCTCTTCTACCTAAACTTACGGAACTTGCCAAGACAAACCGTCCACCAGATGTCCTTATTTTATACGTGGGCTCAAATGATGTTGGTTACGTTAAACCAACAGATTTAGTTAGGATGATTAAAACAGATATGGGAACTATTAAAGAAATGTACCCCGACACAATGCTGATATATAATGAAATTTTATCTAGAATCAACTGGCGAGGTGCACCCAATAATGAGGATGGTGAACACCAACGACTTACAATCAATAAATATGTCAAACCTGTCATAGAATCAATGGGTGGTCTTATGATTCATCATCCCGACATCAGGAATATCAACCACGCATTATACAGAGATGATGGCGTCCATTTAAATGACACTGGATATGATATATTTAATAACAATGTTGGAGACACAATTAGGACCGTTCTTTTAAGATTGAAGATGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10197	Cir_N	N-terminal domain of CBF1 interacting co-repressor CIR	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019339	Domain	CBF1-interacting co-repressor CIR, N-terminal domain	Interproscan
IPR036514	Homologous_superfamily	SGNH hydrolase superfamily	Interproscan
IPR040014	Family	Corepressor interacting with RBPJ 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13151	CBF1 INTERACTING COREPRESSOR CIR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06066	CIR; CBF1 interacting corepressor	-	Notch signaling pathway	ko04330	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_18613-11.16 global RNA-seq network