Gene detail

Detailed information of Bpl_scaf_17856-4.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_17856-4.5	BREAST CARCINOMA AMPLIFIED SEQUENCE 3	Bpl_scaf_17856	401618	445188	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_17856-4.5

ATGGAAAATGTTGTTGACTTCATATCAGATGTTGTACCACAGGCCTACAGTGGCAGTCAGAAAGTTGATGATAAAGAGAAGATCCTGTGGATGAGGTTTGAAAGGAGTGATATCAATGATAGATTTGTAGCTCCAAGCGGTGAAGCACAAGAGGTATATTCAGTAAGACAAGGTCCAGTCAGAATTTTGAGGATGCTAACAACACCAACACCAGCTTTTGGTGAGAATGATAAATATGCTAGTAAAAGACCATTAGTAGCTTCCTGTGATACTTCAAGTGCTGGACAGCCATATTGTTCTGTCAAGTTTGTATCACTTAAGACAGGAGATGAAGTTCATAGCATCAGTTTTAAAACTTATCCAGTCATTAATATAGAGTGCAATAAAAGAGTAGTTGTTGTTGTCTTCAAAGAAAAAATATGTGTATTTGATGCAGCCACCTTGAAACAAAAATTCTGGATTACAGATTGTTTCCCATGTACCGGTGCCAGTGAAAATCCTATAGCCTTAGGGAGCAGATGGTTAGCCTATGCTGATAGAAGACTAGTACCATTACATCAATCATTTGGAGGAATGTCTGGTGACGGAGCTCAGTCATATGCTGCTACAGTAATTAGTGCTGCCAAGGGTGCATTTAAAGGTTTATCTGTGTTTAGTGAGGCTGTAGTCAGTAATCTTACAGGAAGTAAACCGTGTCCACTTACCAAGAAACCAGACTCTACACAAATGGATAACGGCAATAGACCTGGCATTATATCTATTGTCGATCTACAGAATATACATTGCGACCATTATTGTGTATCAGAAGACAATGAAGATGATAGTTTGGTAGCTCATTTCCATGCCCATGCTAATGAACCTGTGTCACATATGTTGTTTGATCCTGCAGGAACGTTGCTATTAACTGCCTGTAAACTAGGACATAATTTCCATGTGTTCAGGATCATGGCACACCCCTGTAGCTCCTCCCTTGGGGCTGTGCATCATCTTTATACACTACATAGAGGAGATACAACAGCTAAGGTTATAGATATGGCATTTAGTCAGGATAGTAGATGGGTAACAGTTAGTACTCATAGAGGTACCACACATGTGTTTCCAATTACACCATATGGAGGAGGACAGTATGATAACTATCCAAGCCTGATCAGACAGAATGCCTTGAATAACAATATAGAGAATCCACGCCTGCCACCATACCCCCACTCCACACAGACATCCCCCCTGTCACAGATCAAGCAACCCCTTAGCCTAGGAACAAGTATAGCAGGAAAGTCACAAAGCCCTACACATACATCTAGTGGGAAAGACAATATGTTAGTAGTCAGTGCATGCTTCTCTACACCAAGACTGTGGATTGGAGGGAATGCTAGTACTGGAATATTGTCAGAGTATATAATAGAACCCAGATCCAAAGCAGGACTGGATAAAGTCTCTGGTGATAGCCCCCTAGAACTAGTAGTTACTGGCTATACACAGTGGACTCTACAAAGAGTTGTAAACAGAGCTAGTCGATTTCATAAAAGTGCCGGCATAGATGATATGGACCATCCTAGAACTGAACGACATAGTCCAATTCTGTCTGGTAGTCCAGGCTCCACAACAGAGGGTAAAAGAGTTGTAGATTCTTTATTTATCATGAGTCAGACTGGAATATTGTCAGAGTATATAATAGAACCCAGATCCAAAGCAGGACTGGATAAAGTCTCTGGTGATAGCCCCCTAGAACTAGTAGTTACTGGCTATACACAGTGGACTCTACAAAGATCAAAGACATCAGATGAAATCAAGCCACCACTGACAAACAACAACCCTCTGATTCTGTCTTGTGAAGCAGTTCTTACTCAACAACCATCAGCATTATGTGGCCATACTCTGTATGTACTGGGTCATATTCTATCAGTCAAGATAACATTAGAGGTAGAGATTATAACACATATAGGACCGCACAGACGGTTATGGATGGGACCGCAGTTTTCTTTCAAGACTTATCAGAATGTACAGAACACGACAGTATTATCAGCCCAGTCGTCTGCCTTGTTATCACAGGGTTCAGAAACCAATGTTCAGGCCATGGATGTGACTATAGACGACGTTAACCTAGAAAGTCTCAAAATACAACCAGCTAGATCAAGTCCTGTTGCCATGCCAAATGCTAGGCCAGCCTATAGACGACTTTCTGGAAGTGACAACACTCCTCCCACCAGTAGTAAAGGGGGACAACATATCAGTCCTTTATTGATAGAAGCAGGTAGTTTTGATCAGTCTCCTAATCTATGTGATGTGTACAGTAGCTGGGCTGAGTCAACTGTAACCAAACCTAGA

Transcript

Bpl_scaf_17856-4.5

TTTTGCAGTGATAAGACTGTTATGGAAAATGTTGTTGACTTCATATCAGATGTTGTACCACAGGCCTACAGTGGCAGTCAGAAAGTTGATGATAAAGAGAAGATCCTGTGGATGAGGTTTGAAAGGAGTGATATCAATGATAGATTTGTAGCTCCAAGCGGTGAAGCACAAGAGGTATATTCAGTAAGACAAGGTCCAGTCAGAATTTTGAGGATGCTAACAACACCAACACCAGCTTTTGGTGAGAATGATAAATATGCTAGTAAAAGACCATTAGTAGCTTCCTGTGATACTTCAAGTGCTGGACAGCCATATTGTTCTGTCAAGTTTGTATCACTTAAGACAGGAGATGAAGTTCATAGCATCAGTTTTAAAACTTATCCAGTCATTAATATAGAGTGCAATAAAAGAGTAGTTGTTGTTGTCTTCAAAGAAAAAATATGTGTATTTGATGCAGCCACCTTGAAACAAAAATTCTGGATTACAGATTGTTTCCCATGTACCGGTGCCAGTGAAAATCCTATAGCCTTAGGGAGCAGATGGTTAGCCTATGCTGATAGAAGACTAGTACCATTACATCAATCATTTGGAGGAATGTCTGGTGACGGAGCTCAGTCATATGCTGCTACAGTAATTAGTGCTGCCAAGGGTGCATTTAAAGGTTTATCTGTGTTTAGTGAGGCTGTAGTCAGTAATCTTACAGGAAGTAAACCGTGTCCACTTACCAAGAAACCAGACTCTACACAAATGGATAACGGCAATAGACCTGGCATTATATCTATTGTCGATCTACAGAATATACATTGCGACCATTATTGTGTATCAGAAGACAATGAAGATGATAGTTTGGTAGCTCATTTCCATGCCCATGCTAATGAACCTGTGTCACATATGTTGTTTGATCCTGCAGGAACGTTGCTATTAACTGCCTGTAAACTAGGACATAATTTCCATGTGTTCAGGATCATGGCACACCCCTGTAGCTCCTCCCTTGGGGCTGTGCATCATCTTTATACACTACATAGAGGAGATACAACAGCTAAGGTTATAGATATGGCATTTAGTCAGGATAGTAGATGGGTAACAGTTAGTACTCATAGAGGTACCACACATGTGTTTCCAATTACACCATATGGAGGAGGACAGTATGATAACTATCCAAGCCTGATCAGACAGAATGCCTTGAATAACAATATAGAGAATCCACGCCTGCCACCATACCCCCACTCCACACAGACATCCCCCCTGTCACAGATCAAGCAACCCCTTAGCCTAGGAACAAGTATAGCAGGAAAGTCACAAAGCCCTACACATACATCTAGTGGGAAAGACAATATGTTAGTAGTCAGTGCATGCTTCTCTACACCAAGACTGTGGATTGGAGGGAATGCTAGTACTGGAATATTGTCAGAGTATATAATAGAACCCAGATCCAAAGCAGGACTGGATAAAGTCTCTGGTGATAGCCCCCTAGAACTAGTAGTTACTGGCTATACACAGTGGACTCTACAAAGAGTTGTAAACAGAGCTAGTCGATTTCATAAAAGTGCCGGCATAGATGATATGGACCATCCTAGAACTGAACGACATAGTCCAATTCTGTCTGGTAGTCCAGGCTCCACAACAGAGGGTAAAAGAGTTGTAGATTCTTTATTTATCATGAGTCAGACTGGAATATTGTCAGAGTATATAATAGAACCCAGATCCAAAGCAGGACTGGATAAAGTCTCTGGTGATAGCCCCCTAGAACTAGTAGTTACTGGCTATACACAGTGGACTCTACAAAGATCAAAGACATCAGATGAAATCAAGCCACCACTGACAAACAACAACCCTCTGATTCTGTCTTGTGAAGCAGTTCTTACTCAACAACCATCAGCATTATGTGGCCATACTCTGTATGTACTGGGTCATATTCTATCAGTCAAGATAACATTAGAGGTAGAGATTATAACACATATAGGACCGCACAGACGGTTATGGATGGGACCGCAGTTTTCTTTCAAGACTTATCAGAATGTACAGAACACGACAGTATTATCAGCCCAGTCGTCTGCCTTGTTATCACAGGGTTCAGAAACCAATGTTCAGGCCATGGATGTGACTATAGACGACGTTAACCTAGAAAGTCTCAAAATACAACCAGCTAGATCAAGTCCTGTTGCCATGCCAAATGCTAGGCCAGCCTATAGACGACTTTCTGGAAGTGACAACACTCCTCCCACCAGTAGTAAAGGGGGACAACATATCAGTCCTTTATTGATAGAAGCAGGTAGTTTTGATCAGTCTCCTAATCTATGTGATGTGTACAGTAGCTGGGCTGAGTCAACTGTAACCAAACCTAGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21034	BCAS3_WD40	BCAS3, WD40 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR045142	Family	BCAS3-like	Interproscan
IPR048382	Domain	BCAS3, WD40 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13268	BREAST CARCINOMA AMPLIFIED SEQUENCE 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006914	Biological Process	autophagy	Interproscan
GO:0042594	Biological Process	response to starvation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_17856-4.5 global RNA-seq network