Gene detail

Detailed information of Bpl_scaf_17778-5.21 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_17778-5.21	NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL	Bpl_scaf_17778	523981	533108	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_17778-5.21

AGGAACTCTTCAACCATGGCCTCTGTGAAACTGTTTTCTGTTTGCCGACCTGCACAAACTTTGATCAGAAGCAGTTTAAGGCCAACTAGTGTCACTGTTTCCCAGAGAAGATCCAACTATAAGGATATAAGTGATCCAGTACCTTCTGATGATTTTAAAGAAATATGGGGAAGGAATTTCAAAACCTTTTTTGTAGAAGAACTTGTAAAGGGATTGGCCCTGACAGCTGGTATGATATTTAAAGAACCAGCTACTATTAATTATCCCTTTGAAAAAGGACCATTGAGCCCTCGATTCAGAGGTGAACATGCTCTTAGGAGGTACCCTTCTGGAGAAGAAAGATGTATTGCCTGTAAATTATGTGAAGCTATTTGTCCAGCACAGGCTATAACCATTGAAGCAGAACCGAGGGCAGACGGAAGTAGAAGGACAACCAAATATGATATAGACATGACAAAATGTATTTACTGTGGTTTCTGTCAGGAAGCATGTCCTGTTGATGCCATTGTTGAGGGTCCTAACTTTGAATACTCAACAGAAACAAGAGAAGAATTGTTATACAACAAAGAAAAATTATTGGAAAATGGCGACAGATGGGAGGCTGAAATCGCTGCTAATCTCCAGGCTGACCACCTCTACAGATAAAAAAAACTAAATTGTCTTCTCAAACAATATTTATAACAATGAAATTGAAACAGAAATTTATACTTTGACCTTTGAACTTATTATTGTACTCTGATTAAAATCATGTGTCAAATATTCTACGCTCCTTTAACCTCTGACCTTACACTAGTTAACCTTATGATTAACCAATGAAAACAAGTTATACAAGAGGCATTTGAGTTAATCAAGACAACGTGAAATCATAAAATTTTAATAATTTGTATTATTAAAATATCATTTTATTGAAAAGCTGTGATTTGTCAATCCATGTCACATGATTACAAAAGGTCAGATCGTGTCATGTGTCAAAGGTTAATGGAGTGTAGTATATTTAACACAGGATTTTGATTAGAATTCATGACAGATGCCATTCATGGAGCAGGACAAACTTGCCCTAATAAAGCACTTGTGGCCATTGTTGGGCTTTCATACTGTACCTATTTCTGGGTGTTTTTTTATAATGTTACATTGATGTGTGTTTTGTCTATACAGATGACTATGTTTTGTTCTGTTCCTTCATCATGGTTTTTTGTCTGTGTTTGTAAATATTGTTCTGTTCCTTCATCATGGTTTTTTGTCTGTGTTTGTAAATATTTTATACCACATGATCTTACATAGATGTTTAATTTCCTCTATGACAGACACCACTTTTACTTGACTTGGGACTCTGAGTAATATGTCAGATGTTTTATAAGAGGTATGAATTACTTACCCTCACGAGCACCTGTGTTCTCCCCCAGTTTTATATGTCAGATGTTTTATAAGAGGTATGAATTACCCTCACGAGCACCTGTGTTCTCCCCCAGTTTTATAAGAGGTATGAATTACTTACCCTCACGAGCACCTGTGTTCTCCCCCAGTTTTTTATATGTTGCTCGTCCTTTTAGGTTTCTGTGTTGTATTGTGTTCTGTGTCTTGTGTGCCCAATGTTTCCCGTGTCTCTTGAATGTGTCTTGTGTGCCCAATGTTTCCCGTGTCTCTTGAATGTGTCTTGTATACCCAATGTTTCCTGTGTCTCTTGAATGTCCCTTCGGTTTTCTCTAACATTTATCTATGAGCTTGTTATTTAATTGTTTGAGAAAGAAACAAAAAAAGGTTTTGTTTGAATTATCTGGTTTAATTCACAGCACTTTCTTCCATTTCAAATTACGTCTGGTCATGATCGTATGGTAGTTGGATTTACAACTACCTGCACAATCTGTACCTATCGCCACTAAAGTTTTGAGTTTGAATCCTGCTGATGGTGAGGTGTACTGGATACAACATTATGTGATAAAATTTGTCAGTGACTTGCAACAGGTCAGTGGTTTTCTCTGGGTACTTTGGTTTCTTCCATCAATAAAACTGATTGCCACAATATAGTTGAAATATTGTTGAAAGTGGCATTAAACACCATAAACCTAACCCTTTAAGCATGTGTAATGGTGTTGTATGTGAAAAAAAACCAACATATTATTTGTTTACGATGTAATTGTTTTTGCACTGACACATAAGTCATCATTTTCATTGGTTTTAAAAATTATGTACTGCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12838	Fer4_7	4Fe-4S dicluster domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010226	Family	NADH-quinone oxidoreductase, chain I	Interproscan
IPR017896	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR017900	Conserved_site	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10849	NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003954	Molecular Function	NADH dehydrogenase activity	Interproscan
GO:0005747	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan
GO:0006120	Biological Process	mitochondrial electron transport, NADH to ubiquinone	Interproscan
GO:0009060	Biological Process	aerobic respiration	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016651	Molecular Function	oxidoreductase activity, acting on NAD(P)H	Interproscan
GO:0032981	Biological Process	mitochondrial respiratory chain complex I assembly	Interproscan
GO:0045272	Cellular Component	obsolete plasma membrane respiratory chain complex I	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03941	NDUFS8; NADH dehydrogenase (ubiquinone) Fe-S protein 8	EC:1.6.5.3 EC:1.6.99.3	Oxidative phosphorylation	ko00190	PMID: 28812709
			Retrograde endocannabinoid signaling	ko04723	PMID: 28812709
			Alzheimer's disease	ko05010	PMID: 28812709
			Parkinson's disease	ko05012	PMID: 28812709
			Huntington's disease	ko05016	PMID: 28812709
			Non-alcoholic fatty liver disease (NAFLD)	ko04932	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_17778-5.21 global RNA-seq network