Gene detail

Detailed information of Bpl_scaf_17714-11.2 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_17714-11.2	SERINE/ARGININE RICH SPLICING FACTOR	Bpl_scaf_17714	1099266	1121968	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_17714-11.2

ATTTCTCTTCGGTCAAGGTCAAATCTTTGTACAGGTATTTTTATAATGGCAGCCAGAGCAACAAAAGATTGGCGACTTGATTGTAAAGTCTACATAGGAGATCTCGGGTATGGAGCAGCCAAACAGGAAATAGAAGATGTCTTCTCACGATACGGACCGTTGAGAAATGTTTGGGTGGCAAGGAATCCTCCAGGATTTGCATTTGTAGAATTTCAAGATCCCAGGGATGCTGAAGATGCTACTAAAGCTTTAGATGGAACGAGAGTAAACGGCAGAAGGGTAAGAGTAGAAATGTCATCTGGGAAATCACGATGGGGTAAAGCAGGTCCTCCTAAGAGAGGAGGAGGTTACAGAGATGACTGGAAGAGACAAGGTGGAGGAGGGTATGGTGGGAGAGGACGTTCAAGATCCATGTCACCGAGACGAGGGAGGGGCTCACCGTCACCAAGACGACGGGGAAGAAGTGATAGTAGAAGCAGGTCAAATTCACCATACAGACGAAGGTCAAGGTCACCAGTTGATAGAAGAAGAAAGGACTGGTGAAGTATGTTTAGAGAAGACTTGTCACAGAAATATTTGTATTTTAGTCAAGTTTTTGAATATTTTAATAGCATTTTTTAAATGAAATACTGTTAAGATCTGACTTTGATATGTACATTTTAATTGTCACTTTTAAGTAGAATATTGGTTGGTTATGTCTAAACTTTCTGTTTCTGAGAACAGAGATTTTTGTAATACATTTTGATATTTACGTTTTAATTAAAATATGAACAGGTGAAAGCATATAATTTTGAAAATTTATTTCTGATATAGTTTTATAAATTTATCAATGACTAAACTTGATCTATGAAGATATAATTTACAAACAAGACTAAGTATGATATTGGTTTGTCTTTCCCTATGTAGGTTATCTAATTTATTTTGAAAGTTGGAGATCTTTGGTGAGTGATGAAATACGAGATGTGTATGATATAAAAAGAAAGTTTGTTCAGCATGTGTTATGAGTACATGTCTTGAAATTATGAAATGATTTTTGTGTGTGCAATATAAATTAAATTAGAATGAATTTCAACTTTTTTAGCATTAATAGAATGTAGAGTTTGTTATCAAAGACTAAGTAAGACAAGAAAGTAATATGAACCTAAATAGTGTATTCTAAAAATAAATCATGGAATCCAGAATGTGTTTTGAATTTTAACATGGGTTGGTGGATATCAGTATTTTATCCTGAGCCAGGGGCGAGGAATAACATTTACTAATATCCACCAACCCATGTTAAAACTCTGATATGTCTAAGAGTACAAATACGGTAGTATATACTTTGATTAGAAGACGGTAATTTATATTTACGTTTGCTGACAATGTCGCACACAATTTATGCTGCCAAATTCGAGCAGACGATAATTCATCAACATTTACGACGGGAAAGTCAGTCACATGCACCGGCGCATGTGCTAATGAGATTATACCCAATCGATAAATCGATAAAATGTGTTTAAGCGAAAGAAGGACGTCATGTTAGAATCTAAAAATAAATGATTGGTAAGATTTCAAACAGGTTTACATTTGGTGCTCGTCATGTCACAAGAATTTAAGTCTTGTTAATAAAACTCTACTAAAACCAACTGGTAGACATTTTTAACTCATAAATAAGCTATTTGTGACTGTCTGTTTCAACAGTAAGAAAGTTTTAAAACTCAACCATTTAAAATTTTATTTGAATCTTTTTTTTATTGTTGCCATTTATTAAGTACAGAGAGTTGGTAACCATAGAAACATGACACACAGGTGTCAATTACCATTTGTGATTGTGACATTTTTATCTTCACTGTTAGTATCATATATTATCAGAAATAAGCCACTCATGACATCACAAAATTTGTGTCAAGTTTTACTAATGAGATCAGTTATATGTAAATGTTTGTGAATTGTAGAACATTTTGTGCATTATATACTACTAGACATGTGTTTCTTCCTCCATTTTTGTTTTCAATGAATTGTATTATAGAATATCATTGATATCACAGAAATATATTTGTAATGAAGTGTAAATACTGTCAACTTTTCTAATAACAATTTGAAATCATAATTTTCATTTTCACTGGAAAATGCTCATGCATTCATCATTGTGTGTAAGTGCTACCAATAATTTTCCCACCAGACAAAAAAAAGTCCAAATATATATTCAGTATAGGTATATTTAGTTTGGAACAAACTAGGAATATATTTTTAATTATTTTGTAATAGCAATAATGAAAAATAAAGCTTTTTTGTTGTTGCTGTTATTGAAAAATCATAGGCAGTCTTTTTTTAAACTGTGAACATATCTAATTCTTTATGAATATATTTTGCAGTGTAAGAAATTGTTGATGGAATTATGCTCATATTGTTTCAATAGTAGCTCTTTTTAGTCAGTATTACACTACTGGCCACATCGATTTATACTTTTTCCATTAGTCAATAAAACCGTCTGGTTATTTATTACACTACTGACCACATGATTTTTACACTTTCCACTTGTCAACAACACTTTGTCATTTTTACACTACAGACCACATGATTTTTCCACTTTCCACTTGTCAATGCAGAGCATGGACAGAAATTGAGAACAATGTGTTCAGCATTAGACATAGATTTCAAAGTCAATATGTTGAGGAAATTTTCATCATTTTTGAATGTCACTTCTGTAGTATTTATTATTATTATAATTAAAGGATTTTGGGAATGGAATATGAAACTTTAATGACTGCAGTTCCTATATGTTGGGACTTCCCCCCAGTGCAGAGAGATTTGTTTGCTCATAATACAGTTAAGATATCTTCAATATCACCATCAATTAAAAAAAAATGTAACAAGATTGTATGATTATTTCATTATGGAGGGCTTTTTGTCAGGGGGCTTTTGTCCTAGGGGGGACTTATGTCCTGGGGGCTTTTGTATGTCTAGATAATAAATTGTACTTGGATATTAAAACGTCTAATTTGTAGACGATAAAGTAAATAATTTTCATAGTGTATATTTCATACAGAACATTGTTGTCATAATTTTATAATTGTGTATATAAGAGGTATATTTGTACTTGTTTGTCTTGTGTTGAAATCTGTTACTATAAATAAACAGTCAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050907	Family	Serine/Arginine-Rich Splicing Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0016607	Cellular Component	nuclear speck	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12892	SFRS3; splicing factor, arginine/serine-rich 3	-	Spliceosome	ko03040	PMID: 28812709
K12892	SFRS3; splicing factor, arginine/serine-rich 3	-	Herpes simplex infection	ko05168	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_17714-11.2 global RNA-seq network