Gene detail

Detailed information of Bpl_scaf_17465-4.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_17465-4.13	RHO FAMILY GTPASE	Bpl_scaf_17465	435538	473069	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_17465-4.13

GCGACTTCCTGCTTTCAGAATATTTCTAAATTTTACGCTGTAAATGATGGATAAAACCAGAAATATCAAAATGCCATTTACAATGGACGACATTGATCTCCCTTGATTACATCGTGCAATCTGAATAGTGCAACATCTTCTTTCTTTGATGTTTGCAATGTTAGAATTTATACAGATGTAACCAATAGATATGATAAAGAAAATACTATCCTGTCAGAAGCAATCAACAGTTTATTTGATCTAAAACACCCTTAAAATGTTGATGTTTTGAGAGTGACCTTCTGAAGTTTTGTTCCTATCGCATTCAATCTTCAGAGGCAATATATTCAGAACTAAAACTAACACGCACAATGTCTTTGAAAAGTGATGTGAGGATACTTCTTCTTGGTGATGCTGGTGTTGGGAAGACCTCCCTGGTATTAACACTTGTTAGTGAAGAATTTCCTGATGAGGTACCGGCCAAAGCAGAAGAGATTACCATACCAGCTGATGTTACTCCAGAGAGAGTTCCTACTCATATCGTAGATTATAGTTCACAAGAACAAGATGAAGAAACATTACAAGCTGAAATAGTAAAGACGATGATGCCCATCCTGAATGACTTTGCAGAAGTAGAAACTTGTGTGGAGTGTTCGGCCAAAACTCTAAAGAATATCAGTGAAATGTTTTATTACGCACAAAAAGCTGTACTTCATCCTACAGCACCTGTATATAATCCAGAGGAAAAAGAGCTGACGTCATTGTGCAAGAAAGCATTGACTCGGATATTCAAGATTTGTGATCTAGATAATGACCACCTTCTCAATGACGACGAAGTTCATTTGTTTCAAAGAAAATGTTTTAATGCACCACTTCATCAACAAGCTCTAGATGATGTGAAGTCTATAGTCAGAAGAAATATTACAGATGGTGTTAAAGACAATGCTTTAACTCTTAAAGGATTTTTATTTCTCCACACACTATTTATTCAACGAGGTCGACATGAGACCACATGGACTGTGCTTAGAGCTTTTGGTTACGATGACCGGTTACATTTAACCAGAGAATTTTTGTATCCCAAAATAATGGTAGGAACAGGATCCACTACAGAATTAACACTCCAAGGCATACAGTTCCTCAAAATGGTCTTCAACAAATATGATGAGGATGGTGATGGATGTCTGTCACCCCCAGAATTACAGAATGTATTCAGCACATGTCCTGTGATGCCCTGGGGACAAGATGTTAATAACACAGTCTGTACCAACCCTAACGGCTGGATTACATCACAAGGTTACCTAGCTCAGTGGGCGTTGACAACTCTTTTAGATGTACCAAGAACTGTTGAATTCTTAGCTTATTTAGGTTATCAGTATTTACATGACAATCAAGTGTCAGCTATTCAAGTTACTAGAGATAAAAAGATAGATTTAGACAAGAAACATACCTCAAGAAATGTGTTCAGATGTCATGTCCTTGGTGCTAAAGGGGTCGGCAAGACATCTCTGTTACAAGGTCATTTAGGAAGAAATCTCCGTTACTTAGCAACATTAGAAAAAGAACATTTATCTAGTTTTACAATAAATACTGTACAAGTATATGGACAAGAAAAATATTTAATGTTACATGAAGTAGACGTTGTTGTTAGTGACATGTTAAGTCCTACAGAGATGAATTGTGATGTAGCCTGTCTATTGTATGATGTAACAAATCCTCGATCGTTTGAATTCTGTGCTAAAATGTATTTGAAACATTTTATGGACAGTCGTATACCTGTATTATTTGTGGCTGGTAAAACAGAATATCCGGCTGTACGACAAGATTTTGAGATGACCCCTGCACAGTTCTGCCATAAATTTAAATTACCCCCTCCTGAAAATTTTGCCTGTTTAGATAAAATCAACCGAGATGTGTATATCAAACTGGCTACAATGGCGGCTTACCCACACGTAAGAGACATCGTATTACAGAATGATAGACTACTAATGAAGATTGGAATTAGTGTTGCCATGGCATCAACTCTTGGATTTATCTTGTATAGAATTGTCAAAGCTCTTCGATAACACCAGCACAATTTTAGATTTTTATACAATACTTTTCAAGAACAGAATTGTCTAGTCGTTTTGATAATACGAGGGAATTTGTTGAAACAAATTATCATAAGCATCGACACTAGTCATTCTTGCATTATTTTGTAACAAAATAATGGCCAATGTCAGTATTTTTTTTTATTAAAAGAAAAATGGAGATCGTTAACTATTAGATGTGTTATTTAAAATAATTGCTTGGAATGGTGTAAGGATGAACCCTTCCTTTCATGAGGAGGGGGCTGGGGAACAAATGTGACTTCACTCTGGAATGTGTCACTTGTGGTATTAAAGACAAATGTTTAAGTGCATTTATAAGTTTTATAATCTCAAGTACTGTTCTCTGAGGTTCAATTGTACTTTAGAAGGGACCTCAAAAGGATATTTCAATAAAGAGGTTGTTCTCATGGTCACTTTAATGTTTTTTTGTTGATAAGTTTTGAAATAATGATATGAAATTTAAGGTTGACCTTTAATCCCCAAAGGTCACAGTAATGAATAATGAAATGATATGTAGGCCATTCTCAAACTAGAAATAATTCTTTCAAAAACTTCTAAACATATGCAGCTAAGTTTCGTGAGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08355	EF_assoc_1	EF hand associated	Family	Interproscan
PF08356	EF_assoc_2	EF hand associated	Family	Interproscan
PF13405	EF-hand_6	EF-hand domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR003578	Family	Small GTPase Rho	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR013566	Domain	Mitochondrial Rho GTPase 1/3, EF hand associated, type-1	Interproscan
IPR013567	Domain	EF hand associated, type-2	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR020860	Domain	MIRO domain	Interproscan
IPR021181	Family	Mitochondrial Rho GTPase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005741	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0007005	Biological Process	mitochondrion organization	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0031307	Cellular Component	obsolete integral component of mitochondrial outer membrane	Interproscan
GO:0047497	Biological Process	mitochondrion transport along microtubule	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07870	RHOT1, ARHT1; mitochondrial Rho GTPase 1	EC:3.6.5.-	Mitophagy - animal	ko04137	PMID: 28812709
K07870	RHOT1, ARHT1; mitochondrial Rho GTPase 1	EC:3.6.5.-	Apoptosis - fly	ko04214	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_17465-4.13 global RNA-seq network