Gene detail

Detailed information of Bpl_scaf_17465-1.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_17465-1.10	DYNEIN INTERMEDIATE CHAIN	Bpl_scaf_17465	67681	102819	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_17465-1.10

TTTTTAGATGATTTCATTTCCGGTTTTGTCTGCAAATTATCATAATTTCGATCTGCCTACTTTCTTCAAATTTCCCGTCTAATCTGTCAATATGTCTGACAGAAAGGCAGAACTGGAAAGGAAGAAACTGCGTCTGGAGCAGATGCGAAAGGAAAGACAAGAAAAAGAGCGTGCAAAAAGTACAAGACAGGCTGATGATACACCTAAACCTGCACAATCACAAGATGTACGAGCAGAAACTGATGAGTTATTGAAAGACCTTGGTATCCCTCTAGCAGGATCAAAGAGTTCAAGTCCAAGTCCAACTCATTCTAATAAATCAACGTCAGATTCAGAAGTCAAACAAGTTGTTGTAGCTACAAGTAGGAAACCTAGAACTAAACTGACCGTAGTAAAAGTATCCGAGACCAATATACCACCAAAAGAAAATGTATCTTATAGTAAAGAAACACAGACTACTATAGTAGAACCATTAGATAAGGAAGATGAGGATGGTGAAACAGACTCAATGGCGGCACAGCCTCAGACACCCACCTCTCGCAAGATGCCACATGTAGAAATGGTAGCACCCAAGCAGACTCAAGAAGACCTAGATAAGAAAGAGGAAAAACCAGTGCCAGAGTTTAGTGAGGAAGAAAAGTTACAGATTATGATGTCAGAGGATTTCCAGAGCTTCTTTAGCAGGTCAACACGACTAGTAGAGAGAGTCTTGACAGAGGATGTGGACATATTTACTGATTATTCAGGGGCAGATAATGAAGGCAAAGATGATGAGTTAGCTGGAGAAAGGTTAAAGGTCAACAGAATATTTTATGATGAACGATGGTCCAAACACAGAACAATAACTAGCCTTGACTGGTCAAAACAGTTTCCAGAATTACTGCTGGCATCTTATAATTCTAATGAAGAATCACCACATGATCCAGATGGAGTAGCATTGATATGGAACATGAAATTTAAAAAGACAACACCAGAATATGTGTTTCATTGTCAGTCAGCAATTATGTCATCAAGTTTTGCAGAGTTTCATCCTAACCTGATTGTAGGTGGTACTTATTCTGGACAGATAGTATTATGGGACAACAGAGTAAACAAACGTACCCCCATACAGAGAACTCCACTGTCAGCTTCTGCTCATACTCACCCTGTCTACTGTGTCAATGTGGTAGGTACGCAGAATGCCCACAATTTGATCAGTGTGTCTACTGATGGTAAAATGTGTTCATGGAGCCTGGATATGTTAGCTCAACCACAGGACAGCATGGAGCTTCATTATAAACAAAGTAAATCAGTAGCTGTCACATGTTTCTCTTTTTTGTCTGGTGACGTGAATAACTTTGTAGTAGGAAGTGAAGAATGTACTGTATATACAGCATGTCGTCATGGCAGTAAAGCTGGTATCAGTGAGGGATTTGAAGGTCACCATGGCCCTATAACTGGAATAGACTGTCACAAAGTTCCTGGACAGATAGATTTCTCTCCATATTTCCTCACATCTTCCTTTGATTGGACGATCAAATTGTGGAGCATAAAAGAACAAAAATATCTTCATTCATTTGAAGATAACAGCGACTATGTATATGATGTTAAATGGTCGCCTACACACCCTGCCTTATTTGCCAGTGTGGACGGGAATGGAAAACTAGATTTATGGAACCTAAATAATGATACTGAGGTTCCTACGACATCAGTAACTATAGATAACAATGCTTGCCTGAACCACCTGAGATGGCATGAAACAGGAAGTCATATAGCTGCCGGGGATGACATAGGGAGAATACATTTATATGATGTTGCTGAGACTGTAGCAGCACCTAAAGGAAATGAATGGTCCAAGTTTGCCAAAACATTACAAGAAATGAAACAACAGGCTACAGAACGGGAAGAAGAAGCCATGTCCTTAGCAACCATGACATCACCACTTAGATGAATAATCCTTATCCATTAAATTTAAAGAAACATTAATACAAATTTGCTACATTAAGATTGGGGGGTATTGTTATTTTTTGTTAACTTCTTGAGATTCATAGTTATGTGCATAAAACCTTAATATTTGATGTATTACATTGTTGTCATGGAAACAAAATGGAATAATTTGTATGAGTTTTTATTTGTTAATATAAGTGAACATATACTGGCATGCATGTTTAATATTCAGATTGACTGTAGAACATGCAAACAAATATTCTGAACATGTTGAGAAGCATGTCACCTAGTCATTTAGAAATATAAAAACAATAAACAGCTATGGCTGACAATACAAAACCATTCTTCTGGCAAGTCTCAAACCTTCTGGCAAGCCTCAGACATTTTGCAAGCCTCAAGCTTCTGGCAAGTCTCAGCCTTTTGGCAAGCCTCAAACTTGTGATTAGCTTCAAACCTCTGACAAGCCTCAAGCTTCTGGCAAGTATCAACCTTTTGGCAAGCCTCAAACTTGTGATTAGCTTCAAACCTCTGACAAGCCTCAAGCTTCTGGCAAGTCTCAACCTTTTGGCAAGCCTCAACCTTGTGATTAGCTTCAAACCTCTGGCAAGCCTCAAGCTTCTGGCAAGCCTCAAACTTTTGGCAAGCCTCAAACTTCAAAACACAGTCATGACAATGACATTGGCATTTATTTTTATGGTAAATATGCATAAAACTACAGCAAATGAGTTGCAAGTGGTGGTCGTGTGGTTAAGGCTGTTGATGTCTAAATACAAGCTAATCATGACTTACATATTGATGTGGCAATGATATCAGCCTCTACCTGTCAGTTTGTTATTGCTGTGTGGACTTTCTCCCCCTATTAATTCTGGTAGTCATGATATAGCTGAGAGTGACAATAAACACCATGCAGATCAGGGTTAGGCCTATTGGTGTTCATTGAAAAACAATCTACTTGGAATGGAAGAATTATTTTTCGACATAAAAGAATAAGAAATAATTTGTTTATGATGTTTTGCTATAAATAAATAAAAAATGCTAAAAATAGTATTATCATAATTACAAAAAACAAGAATGGTTGTATTTGGTGAATAGTTTATTCCATATATACTCATGATTTACCACGTATGGTTGTACATGTATTTGATTAAAATGAGTGTTGAAAGTAACAAGGAAATTGGTTATTTCTATTTCAGGGGAGACAATTTATATCTTGACTGTTTTTGCAGTCTTATTTCAATCTTCAATCATTATGTTAGGTGGAAGTTATTAATTACCCAGTATTAAAATTTATAATTATTTATGAGGGAAGAATAAATTGTTAAAAAGTGTGTCCGTCACAGCGAAGCACTATTTTATTTTCACATGGTGCTGATATACAGTGCTTTAAGTTATATTTGTATAGTATCCATGTATATATGGTAATGAATTCATATTTTGTATAGTCTTATTGTCAATATTTATTGAAATTTATCAAACATGCAAATTAAATGCTTAATAAAGATACTGAAAACAGAC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF11540	Dynein_IC2	Cytoplasmic dynein 1 intermediate chain 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR025956	Family	Cytoplasmic dynein 1 intermediate chain 1/2	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR050687	Family	Dynein Intermediate Chain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12442	DYNEIN INTERMEDIATE CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005868	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0010970	Biological Process	transport along microtubule	Interproscan
GO:0045503	Molecular Function	dynein light chain binding	Interproscan
GO:0045504	Molecular Function	dynein heavy chain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10415	DYNC1I, DNCI; dynein intermediate chain, cytosolic	-	Phagosome	ko04145	PMID: 28812709
			Vasopressin-regulated water reabsorption	ko04962	PMID: 28812709
			Salmonella infection	ko05132	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_17465-1.10 global RNA-seq network