Gene detail

Detailed information of Bpl_scaf_17081-3.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_17081-3.9	RFWD3 PROTEIN	Bpl_scaf_17081	294744	313467	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_17081-3.9

ATGTCTTATATTGACGTGGAGGGGTCAGATGATGAAGTTATTGTGGTAATAGAATCCCCTGACAGACAAATAATAACAGATGATATTGATGTCGAGGCTGAAGAAGATGAATCTGGTAACCCTATACAGGCTCTACCCATTATTGGTGAATCGCCTGTTGGTACCAGTACAGAAGAAAATGTTTCATTAAGACCAATCGGCCCTTTTCTACCATTGCCACACAACCTAATACTCACCCCAGAACTAACAACATTCGCTTGCACAGCAATATCAGCTCAAAACATCACCAGACAGTCAAATGCATCTTTGACACCGTCAAGCAGTATTGCACCAACAATGTCTGCTAATCAAGCCTCAGTTTCAACTACATCAGCATCTGTTGTCATGGAAACTTCGGACGCTGTTACTTCTAGTTCCTCAGTAGAAACACCAGTGACACCGTCTTCTTCTATAGGGTTAAATGTGAATGCTATTCAAATGATAGGAGGACAGAAAGATTCCCCGGGAGATTTTAGGTCACCAAAGAGGCGTAGGATTGTGTCCTCTGAGAAGTCTGTCTCTGGTGATCAAGAAGAAGAAGGAAATTGCTGTCCTATATGTTTTGAAGAATGGACAAGTTCTGGTAACCACAGACTGGCATCATTACGTTGTGGACATTTATTTGGTCAAAGTTGCATAGACAAATGGTTGAAAGGTCAAGGAGGGAAGTGTCCACAGTGTAATGCTAAGGCTAAGAGGCAGGATATTAGAGTTTTATATGCTAAATGTTTAAAGGTAATAGATACTACTGAGAGAGATAGAGCTCTACAGGAATTAGAGAAAGAGAAGGAGGCACGGAGGAGGGGAGAAATGGAGGATGCTCAGATGAGGATGCAGCATCATATGGCAGTAATAGAAAATGTTAAAATGAGGGAAGAAATAACAAAGTTACGAGAACAATTACAACATGTCAGGTCACATTCTTCTACTGTACCTAATTTATCTCAGTCCAGTGTCTCAGAAAATCCTACTTCAAGAACATCTGATGGACAATTTGTGTTTGACAAGACTATCAAAATATGGGATGCTGGAAACTGTAGAGTAATGGCGTACAGTCCTTCACTAGCGACTTTGGTTGTGTCACAGCCATCAGCAAGTGCCCTGTTTCCAGGTTTTGGAATAAAAAAGATCAGTTCACTGGACTTCAAGACGTCACAGTATTTAACCATCCACAGTAAAACGATCCGTGATGTTTGTTTCCATCCGGTCGTTGACGATGGAGTATTATTGAGTTGTGCTCTAGACAAAACTGTCAAAATGACAAGTGTTATCAGTAATGCTGTAGTTCAAACGTATGAAACTCCGTCACCCTCATGGAGTTGTGTTTGGAATTCAGATGATAGAAACTTTTTCTATGTTGGGATGCAAAATGGTCGTGTTTTAGAATTTGATATTCGTAACACTGTAGGCCATGTTCAAGAGTTAAATACAGAAGGAAGTCGGTCACCTGTAGCCTCACTTCAATATGTACAAAAAGATATGAATGCTGTGTTTAGATGTGGTGGTTTATTGGTTGGTCAGCTAGACAAAGTCAGTTTTTATGAGAAGAAACAAGATCAGTTTAAAGTACACATTCTACCTCTAGAAGGGAATTTATCCAGTCAATGTTTTGAGCCAAATACAAGACATTTGTTGTGTAGTTTTAAACCGTCTCACAAACACCCAACAGTGAGACATCAGTTATGTGAAATGAATTATGTCAACGTGAGTCCCGACCCTACGGCTTTAGATATGTCGTGTTCCTGTGATATTATACAAACATTCCACGCAGGTCGTACACAGACTCTGCTGAGTAAATCTGTTGTTTTACCTCATCCATCCATGGATAATAATCTACTAGTGTGTGCTGGAGACGAATCAACACAATCGTTACATATATGGGACAATGGAAATAGCCAATTGAAACAGAGACTACGGACAGATGGCGCTGTTTTAGATATATGTGCAATAAGGACCAATCATACAACATATCTTGCAGCATTGACTGACAAAATTCTTAAAGTGTTCAAGTGGTGCTGA

Transcript

Bpl_scaf_17081-3.9

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR037381	Family	E3 ubiquitin-protein ligase RFWD3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16047	RFWD3 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0036297	Biological Process	interstrand cross-link repair	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15691	RFWD3; E3 ubiquitin-protein ligase RFWD3	EC:2.3.2.27	Ubiquitin system	ko04121	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_17081-3.9 global RNA-seq network