Gene detail

Detailed information of Bpl_scaf_1669-4.14 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_1669-4.14	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11	Bpl_scaf_1669	425874	445367	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_1669-4.14

TTAATTCATACTGTCCGGTTTGCGGTAAACGATCTTCGATGGTACCTGTTCACATGTGACAAAATTACACCGGTAAACAGCTGTAACAAGACAATTTCTTCAGAATGGCAGACGCAATGAGAGCCCAAGTTGGTGCTTTACTAAAGGGCATTGATAGATACAATCCAGAAAATTTAGGTACATTAGAGAAATATATTAATATGCAGGCACAAGAAAATACATACGACTTGGAGGCCAACTTAGCTGTGTTAAAATTATACCAGTTTAATCCAATGTACTACCAGACAACTGTAGCTGGTCAAGTTTTATTGAAAGCCCTTACAAATCTGCCCCATACAGACTTCACATTGTGTAAATGTTTGATAGACTTAAATAAGCAAGAAGAAGAGCCGATCATGAAGATTATGCATATGGCTGAAATGTTAGAAATGTGTCAGTTTAAAAGTTTCTGGGAATGTTTAAAAATAGACCAAGATTTAAGTTCTAGTGTTCATGGAATTAGAGGTTTTGAAGACAGTATAAGAAAATTTGTTTGTCATGTTGTAAGTGCCACCTACCAGACCATACCATTTGATACCCTGACAGAACTTCTAGGCAATATACCAGAATCTCAAGTAAAACAGTGGATATCAAAGTATGGTTGGACATTACAAAATGATGGCAATGTTTTCATTACGAACCAGGAAGAAAATATCAAAACAAAAAATATTACAGAGAAAATCACATTTGAAAGTGTGGCAGGTATAATGGCATCTTATAAGTGAAAGTTGACTATGGTCCATCTTCTATACAAACATTACAGCATCTTAATGTCATTAAAACTAAAAACTAAAATGTTATATTTATTGTACTACAATCGACCAGGTCTGGAATATAATTCTATATACCCAATAGGTCAATTCTGGTATATTTTCAACAGGATTATCAAGCCAAACCAATATTGTAAAATTGATATATGCAGTTTTTCATATAAGCATGTAGCATTCAAGGAGTAAGAACAAGGACTGGTTGGCTCGGAATCAGGATAATGAGTCAGAGTGCAGTGATGTGTCTACCCACAGACTGTTGCTGCAGTGAGCTAGCTATAAAAATCCAATCAAGCAAGTTGTTCTAATAAAAGTAGCAATCAAGATCATCTCATTGAGATGTAACTTGTTCTCTCCATGAAAAATACAGCTGAAAAATTACTCACATGACATTAAATAACAATCACTCGCTCCCTCAGAATTGGTCACATGACATTAAATAACAATCACTCGCTCCCTCAGAATTGGTCACATGACATTAAATAACAATCACTCGCTCTCTCAGAATATCTGTGTCTGGGACAATCGAGCACCAGTGAAGAATCTTAAATAAAGATACATGTATCTGGTACACTAAACTGACATTGGTATCTTTGCTTTTTATTGTCTAAGGAATGAGACAATATCAACACTAGAGGCTCACCTGAGCCTGTATCGCTCATACAGAGTTTGTGTTCAATGAAGTGTAAATTGTAAGAAAAAATAATTTATTCATTTTTACATAGTATCTTTATGTTCAACTTAAAACAAAAATTAGAAATTTTGGGTGATGCTCCCCTCATATTTCAGAAACAGTAAAAGCTATAAGAAATCAGTTGGAACACTTCAGACAGGAATTCAAAGGAAAAAATGCATGTCATATTTCTCCAATCTTGTCTTCATTATCCCTTCTTGTCCTGATGTACCATATTTTTCTATTTTTTGTCTGATTATCCCTTGTCCTGAAATATCTAAAATTCTTCCATTCTTTCTCTGTCTGATTACCCCTTGTTGTCCTCAATTTTTCCATTCTTTTTCTGATTCTCCGAGATATCTTGAATTCTTCTGTCTTTGCCTGGTTGTCTCTTGTTGTTCAGTATTCACCTGTACAGCGTAACCTGTCTAAATTGAACAGCTATGACACCAATATATTTGTTAGGAATGTAGGTTTGTATTGTTCAAACAGGCTGAAATTGTAAATATTTCAAACATTTTGACCAGATTTGAAATTCAATTTATATAGGATCTGGTTTATTCAGCTTTCGTTTAAGACTGGTTACACCATACTGTAAATTATTCCGTTGTCACAGCCCTGACAGAGCATGCTTGGCATTGTCCTAATGTATGGGTTATCTTCTCAATTAATTTTGTATTCTGTCTTAAATTTTTTTATTTCTGGCTTGCTCAAGTGGCTAAAATTCTCAATAACTTTTTGAAAATCTGAAATGTGCAATAAGAATAGTATGAACTGATATGAATAATAAAGTAATACCGTCTGCAATATTGGGTTATTTCCTTCTGTCCTTTTTTTGCCATTAAACATTAGTTTAAACATTTAAAGGTAAAAAATAAAAGTTTTACACTGCATATCAGTTGAAAATCACACTATTATTGCTGTACTACGTTTGCCAGCTTCATTATCTATGACCAACATGGATACTGACCCATATAAATATGGACGTCGTAATGTGGATGAAAAGGTTAGCATCTATAATACCGGTAAATAAAAAAATTTGATTGCATACATCTTTTTCTTTATAAATGAAATACAAGTATATTTCGATGGCATATAATTTTATGTACATGTAGTAATATTTATTTGAAAACAATTGTATTTTACAATCACATCAATGGAATTGGAAAAAATTGCAAACAAATGCCAAAATGGAAATGGGAAGACAAGATTTGTTTGATTATAAACTGTATGTTTGCACAGAGGAAGGTCCAGCCAATGGGTCACATGAATATTAGAAAATAGGTTGTGGAACAATAATCTTACAGCTATGTATATATACAGTTAACAGGGTTTTCAATATTTTTCAAGTGTACCAGTACTGCACTATTTACAGGTAATACTTTTCCTTAAAATTTGAACAATTTTCATAAATATCTTGTACAACACTCTTTAAAATCAGGAGGTACCAAAGACAATCTTAAACGGGTAAAAGTACCTGGTACCAACCCTTATTGAAAGGCATCAGTAGTTAACAAGGACCATATATTTTAATCTAATAAGAATATGGCACGGCACTCGTTAAAAAATTGTTAGTATCTAATGGAAGCTTGGTGTATTTCCCTGGGAACTCTGTTTTCAATAAAAATGACAGTCACAATTTACTGAAATACAGTGGAACCTGTCTAATCCGACACACCAAGGGACCAGGGAAATGTCTCGGATTGTACAGGATGTCGGAATACTCAGGTTTTATTTTAGTTAACAGAACTACTTTGGGACCATAAATTTTCGTCGGATGTCACAGGATGTCGGAAAACTCAGTGGTCGATTTCACAAAAAGTCGTAAGTCTAAGAGCAGTCGTAAGTGTGAATTTCAACCAATCAAAAGCTTGGAAATTAGACTTACGACTTTTTGTGAAATCGACCCCAGGTGTCGGATTGCACAGGTTTCACTGTATCAAGTTTTGGTGTTAAGAGGTCACTAGACTTAACGGAACTTAAAAGTCAACTCAGATCAAACACTAACCTTGACCTAAAATCTGTACAGCAAGTTTTGCTTTGCAGAAACATAATTGACATTCCTCACTATTTTCTGGACAATTGTAGCTATTGAAATGATACTGAGGCCACCAAGACTTCCTCATTTTCCAGCTGTCTTTAATTGTATTCTGTACATCAGTTCTAAAACAATATGGTAATAATAATTACATTACTGTGTTAATATAAATAAGAAATTTAAGATGAAAGAATTTGGATGAAAATACTGGTAAACACAAAAGTAAATGCATCTAACATTGGATAAAAATCTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10075	CSN8_PSD8_EIF3K	CSN8/PSMD8/EIF3K family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000717	Domain	Proteasome component (PCI) domain	Interproscan
IPR009374	Family	Eukaryotic translation initiation factor 3 subunit K	Interproscan
IPR016020	Homologous_superfamily	Translation initiation factor 3, subunit 12, N-terminal, eukaryotic	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR033464	Domain	CSN8/PSMD8/EIF3K	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13022	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005852	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0006446	Biological Process	regulation of translational initiation	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15028	EIF3K; translation initiation factor 3 subunit K	-	Translation factors	ko03012	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_1669-4.14 global RNA-seq network