Gene detail

Detailed information of Bpl_scaf_16621-16.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_16621-16.13	HOOK PROTEINS	Bpl_scaf_16621	1653504	1687635	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_16621-16.13

ATGAATCGTGATGAAGTCTGCGAGAGTTTGATTATATGGATGCAGACATTTAATATTGATGCCTCATGTGATTCAGCCGCTGAACTGAGTGATGGGGTAGCTATGTCCCAAGTCCTTCATCAAATAGCACCAGAATACTTTGACAACAATTGGTTGTCCAAAATAAAAACAGATGTTTCCACAAATTGGAGATTAAAGGTCAGCAATCTAAAGAAAATATTGAAAGGGATTTTAGAATTTAACCTTGATATATTGGCAATACAGATACAAGACTTCCAGATGCCTGATGTAACAGATATAGGTGAACACTGTAACACGTCTGAACTAGGACGCCTACTTCAGCTAATTTTAGGATGTGCTGTGAACTGTGCAGATAAACAGAAGTATATACAGAGGATAATGTCAATGGAAGTATCTGTTCAACAAGTTGTAATGAATGCCATTCAAGAGCTGATGATGAAAGAAGTTTCTACCAATGGTGATGGAGACTCAGAAATGGCTGATCAACTTAAGAAAGCAGCGGACGATTTAAACTCAGCACTTGAAGCCAACGAAGACTTAACACAAAGGTGTCATGAACTAGATGTACAGGTTGCAGCACTACTAGAAGAGAAACAAGTTTTTGTAGGTGAAAATGAAAAGTTACAGGAGAGATTATGCCAGGCAGAAAATTTGGATGAACCAAGCACGCCAGCAGGAAAGAGATATCAACAGTTACTACAACAAGTAGAAAAATTACAGGAAGAAAATTTTAAAATAGATGCAGGGAGAGATGATTACAGAATAAAACTTGATGTCATGTCTAAAGAGTTCCATGAATTAAGACAGAAGAATTTAGAATTAACAGCTATTGCAGAGGAAGCCAGAGGATTAAAGGATGAACTTGATGTATTACGACACACTTCAGAACAAGTAACAAAATATGAAACTATGATTGATTCTTATAAGAGAAAATTAGATGAAATGGGTGATTTAAGAGTACAAGTTCAACTTCTAGAAGAAAAAAATACAAAGTATATGCAGAAACAATTAGAAATGGAAGAGGAAATGAGGAAATCTGGTCCAATGAAACAACAGTTAGATATGTACAAACGACAGGTACACGAACTACAGAATAAATTATATGATGAGACAAAGAGAGCTGATAAGGCAGATTTTGAAGGAAAGAGAGCTATAGAGAAAATGACAACCTTACAGAGAGAAAAAGAGAGAATAGCAACAGAAAGAGACTCCTTGAAAGAAATGAATGACGAGATGAAATGTACACAATTACAGACGTTAGAAGGAAATGAACCCAATGATCTGACAGCTACACCACGAGTAGAAATGTTATCTCTACCTCCTGATATTAAAGAGAAAATTTTACGTCTTGAACATGAAAACAAAATGTTAAAGTTGAAATCCAACAGTACAGAAAGTGACGATAGTCAAGTACTACAGTCTATGTTAGATGATACTAATTCACGTAAAAATGAACTAGAAACAGAACTTAGAATTGCAAACCAGAGGATCATGGAAATAGAAAGTCAAGTAGAAGATTTACAAGAAAATCAAAAGACAGTTTCAAATGAAGAAATTATAGAAATTAAGAAAAAACTAAATGAACAAATTCAACGGACACAAGAAAAAGACAATCAGTTAACAAAACGTAAAACTTTATTAGAGGAACAGGAATTAAAATTAAGTGAAAAATCTGATACAATTCAAGATTTACAGGATCTGTTAAATAAAAAAGATGACGAAATAAAATCAATGGAAGCTCAATATAAAAAATACCTGGACAAAGCTAGACAGGTAATCAAAGCTTATGACTCAAAACAGAATGTAGGAACAGCTTCAGAAGTCCAAGCATTGAAGAATCAGTTGTCTGAAAAACAAAGATATATAGATCAGATGGAGGAAGACAGTAAAAAATCCAGAGTTATACGAGAAGAAGAAGATAGATATTTAGTTGCTTCCTGGTATGATTTAGGATATCAGTTACATAGACAGGCTACAGAAGAAAGGCTCAACAATAGTACAAATGGCATGTCCTTCTTAGCTCGTCAACGACAGATTAACTCACGAAGGACACAATCTATACCAAACTCTCACACGAATTCTTCTAGGTGA

Transcript

Bpl_scaf_16621-16.13

GAGTCTGTATAGATATATCACAAGTGGAACTAAAAACCCTAATAAAATAATGATTGCATAAAGTAACTCGTCGCCAATTCCTTCTACAATGGTGGACTCTATAAAATGTCCTGCCATTTGATATTAAAACCTTTTTTCTGTCATGAATAAACTATGCTGCATAACATTTAAATATCAATTTTTGTCCTTTATTTACTTATTGACAATAGTATGTAAGATCCTGTTTGGAACTGAAGGTTGCATCTATTTACTCATCAGTCTGGTTGTTATTGCAGAGAAAACGAAACCGGAAGCGGAAGTTGCAGCAGAGTTACTTCTCTTAGTTGAACTATTTTTCTGCTTTGACAGGTCTGGGGCGTTAAAAGCTCGAAAATGAATCGTGATGAAGTCTGCGAGAGTTTGATTATATGGATGCAGACATTTAATATTGATGCCTCATGTGATTCAGCCGCTGAACTGAGTGATGGGGTAGCTATGTCCCAAGTCCTTCATCAAATAGCACCAGAATACTTTGACAACAATTGGTTGTCCAAAATAAAAACAGATGTTTCCACAAATTGGAGATTAAAGGTCAGCAATCTAAAGAAAATATTGAAAGGGATTTTAGAATTTAACCTTGATATATTGGCAATACAGATACAAGACTTCCAGATGCCTGATGTAACAGATATAGGTGAACACTGTAACACGTCTGAACTAGGACGCCTACTTCAGCTAATTTTAGGATGTGCTGTGAACTGTGCAGATAAACAGAAGTATATACAGAGGATAATGTCAATGGAAGTATCTGTTCAACAAGTTGTAATGAATGCCATTCAAGAGCTGATGATGAAAGAAGTTTCTACCAATGGTGATGGAGACTCAGAAATGGCTGATCAACTTAAGAAAGCAGCGGACGATTTAAACTCAGCACTTGAAGCCAACGAAGACTTAACACAAAGGTGTCATGAACTAGATGTACAGGTTGCAGCACTACTAGAAGAGAAACAAGTTTTTGTAGGTGAAAATGAAAAGTTACAGGAGAGATTATGCCAGGCAGAAAATTTGGATGAACCAAGCACGCCAGCAGGAAAGAGATATCAACAGTTACTACAACAAGTAGAAAAATTACAGGAAGAAAATTTTAAAATAGATGCAGGGAGAGATGATTACAGAATAAAACTTGATGTCATGTCTAAAGAGTTCCATGAATTAAGACAGAAGAATTTAGAATTAACAGCTATTGCAGAGGAAGCCAGAGGATTAAAGGATGAACTTGATGTATTACGACACACTTCAGAACAAGTAACAAAATATGAAACTATGATTGATTCTTATAAGAGAAAATTAGATGAAATGGGTGATTTAAGAGTACAAGTTCAACTTCTAGAAGAAAAAAATACAAAGTATATGCAGAAACAATTAGAAATGGAAGAGGAAATGAGGAAATCTGGTCCAATGAAACAACAGTTAGATATGTACAAACGACAGGTACACGAACTACAGAATAAATTATATGATGAGACAAAGAGAGCTGATAAGGCAGATTTTGAAGGAAAGAGAGCTATAGAGAAAATGACAACCTTACAGAGAGAAAAAGAGAGAATAGCAACAGAAAGAGACTCCTTGAAAGAAATGAATGACGAGATGAAATGTACACAATTACAGACGTTAGAAGGAAATGAACCCAATGATCTGACAGCTACACCACGAGTAGAAATGTTATCTCTACCTCCTGATATTAAAGAGAAAATTTTACGTCTTGAACATGAAAACAAAATGTTAAAGTTGAAATCCAACAGTACAGAAAGTGACGATAGTCAAGTACTACAGTCTATGTTAGATGATACTAATTCACGTAAAAATGAACTAGAAACAGAACTTAGAATTGCAAACCAGAGGATCATGGAAATAGAAAGTCAAGTAGAAGATTTACAAGAAAATCAAAAGACAGTTTCAAATGAAGAAATTATAGAAATTAAGAAAAAACTAAATGAACAAATTCAACGGACACAAGAAAAAGACAATCAGTTAACAAAACGTAAAACTTTATTAGAGGAACAGGAATTAAAATTAAGTGAAAAATCTGATACAATTCAAGATTTACAGGATCTGTTAAATAAAAAAGATGACGAAATAAAATCAATGGAAGCTCAATATAAAAAATACCTGGACAAAGCTAGACAGGTAATCAAAGCTTATGACTCAAAACAGAATGTAGGAACAGCTTCAGAAGTCCAAGCATTGAAGAATCAGTTGTCTGAAAAACAAAGATATATAGATCAGATGGAGGAAGACAGTAAAAAATCCAGAGTTATACGAGAAGAAGAAGATAGATATTTAGTTGCTTCCTGGTATGATTTAGGATATCAGTTACATAGACAGGCTACAGAAGAAAGGCTCAACAATAGTACAAATGGCATGTCCTTCTTAGCTCGTCAACGACAGATTAACTCACGAAGGACACAATCTATACCAAACTCTCACACGAATTCTTCTAGGTGAAACATGTGATCCTCACTTATGTCATGTGCAATCTATTTATTCATATTGTATTATATGTCACAAAGGTCATATTTTGTGTCACCTCCATACCAGAGCTGACGTATAGGGATCACTATCCATCCTCTTTTCCACACCATGTGATCACACTATTCTTATCCACAACTCCTCTTTCCATGCTTGATGTAAAATAACAAATTTTACATTCTTTCTAGTGTGACTTTTCTATTATATTTTCCGTTATTTTTTTTTCTAGTATCCTATGTATGTCCAAGTTATGGGATATTTACAATTTTTTTTGTTTTATGGATCATGGGGAGACATGCGACACACGTCTTCTTAGAAAAATCCATCATTTTTGTAATAAATGAAGTAAAGGACATTTTTTTAAGCAATAGACTAGTATATAGCTCAAGATGTTGTATTTACTGCCAGTATAATATGGCCATTACTAAATCTATTTAAAATAAACAACTAATTGACAATCTACAAAGTGGATTTATAAAACAAAACATCGTCCTTTTTTAAATTGAATGACTTGAAGGGATTTCATTGGTTAATAACTGTGGATTAATTGCACATGCCGTGTGTGACATCTGTCCAATTCAAATGTCAGTCTTTTCAGACAGCTAAACATAACAATTATCACTGAACACCATGTCATCATTGTACATGTTTATGTTAGAACAATGATAGACCAATTGTATAACATGTAATTATATAGGGAATTCTGCCTTGAACCTTCTGTTTTACATCAGTAGGGAGTACTGCCTTGAACATTTTGTCGTACATATATTTGGGAGTACTGCCTTAAATCTTCTGTTGTACATGAAGTGACTAAAGTTATATTTGCGACATGCTCATCTTTATGAGTTATTGATGGGGCATTCAAACATCTAGCTATTTTATTTTGAAAATATGTCTTAAAAGAACCCAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05622	HOOK	HOOK protein coiled-coil region	Coiled-coil	Interproscan
PF19047	HOOK_N	HOOK domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001715	Domain	Calponin homology domain	Interproscan
IPR008636	Domain	Hook, C-terminal	Interproscan
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR043936	Domain	HOOK, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18947	HOOK PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0030705	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan
GO:0031122	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0051959	Molecular Function	dynein light intermediate chain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16536	HOOK3; protein HOOK3	-	Motor proteins	ko04814	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_16621-16.13 global RNA-seq network