| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_16054-3.8 | PROKARYOTIC DNA TOPOISOMERASE | Bpl_scaf_16054 | 255803 | 309165 | + |
| CDS | |||||
| Bpl_scaf_16054-3.8 | |||||
| Transcript |
| Bpl_scaf_16054-3.8 |
| Protein |
| Bpl_scaf_16054-3.8 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01131 | Topoisom_bac | DNA topoisomerase | Family | Interproscan |
| PF01751 | Toprim | Toprim domain | Family | Interproscan |
| PF06839 | zf-GRF | GRF zinc finger | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000380 | Family | DNA topoisomerase, type IA | Interproscan |
| IPR003601 | Domain | DNA topoisomerase, type IA, domain 2 | Interproscan |
| IPR003602 | Domain | DNA topoisomerase, type IA, DNA-binding domain | Interproscan |
| IPR006171 | Domain | TOPRIM domain | Interproscan |
| IPR010666 | Domain | Zinc finger, GRF-type | Interproscan |
| IPR013497 | Domain | DNA topoisomerase, type IA, central | Interproscan |
| IPR013824 | Homologous_superfamily | DNA topoisomerase, type IA, central region, subdomain 1 | Interproscan |
| IPR013825 | Homologous_superfamily | DNA topoisomerase, type IA, central region, subdomain 2 | Interproscan |
| IPR013826 | Homologous_superfamily | DNA topoisomerase, type IA, central region, subdomain 3 | Interproscan |
| IPR023405 | Homologous_superfamily | DNA topoisomerase, type IA, core domain | Interproscan |
| IPR023406 | Active_site | DNA topoisomerase, type IA, active site | Interproscan |
| IPR034144 | Domain | DNA topoisomerase 3-like, TOPRIM domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11390 | PROKARYOTIC DNA TOPOISOMERASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003916 | Molecular Function | DNA topoisomerase activity | Interproscan |
| GO:0003917 | Molecular Function | DNA topoisomerase type I (single strand cut, ATP-independent) activity | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006265 | Biological Process | DNA topological change | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K03165 | TOP3; DNA topoisomerase III | EC:5.99.1.2 | Homologous recombination | ko03440 | PMID: 28812709 |
| Fanconi anemia pathway | ko03460 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_16054-3.8 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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