Gene detail

Detailed information of Bpl_scaf_15800-0.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_15800-0.5	PHOSPHOSERINE AMINOTRANSFERASE	Bpl_scaf_15800	58355	69267	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_15800-0.5

ACTTGAATGTCGTCCAAACTGTGAACATTAGAATATAAAAAAAATATTTATTTTTAATCACAATTGGATAATTTAAGTATTAATTAACTAAAAATGGCAAATAGAGTGATTAATTTCTCAGCTGGACCTGCTAAACTGCCCATGCAGGTATTGGAGAGGGCCCAGAAAGAAATGTTGAACTACAATGGTCTTGGTATTAGTGTTATGGAACTGAGTCATAGATCTGCAGATTTTACAAAAATCATCACCACAGCTGAGAATGATTTACGTCAACTTTTAAACATCCCAGACAACTACAAAATAATCTTCAAACAAGGTGGAGGAACTGGTCAATTTTCTGCCATTCCATTAAATCTGATGAACTATAAACCTGGAGCAACAGCTGATTATATCGTTACAGGAAGTTGGTCGGCAAAAGCTGCACAGGAAGCTGAGAAATATGGAAAAGTGAATCGAGTCCTTCCAAAAGTCTCTAAATATACAACAATCCCAGACCCCTCAACATGGAATCTGAACCCTGAGGCATCATACGTCTTCTATTGTGCGAATGAAACTATACACGGTGTAGAATTTGAGTATATACCAGAAACAAATGGTGTTCCTTTAGTCTGTGATATGTCTTCTAATATGTTGTCCCGTCCATTTGATGTCTCAAAGTTTGGAGTTATATTTGCTGGTGCTCAAAAGAACATTGGTTGTGCTGGAGTAACATTAGTCATCGTAAGAGAAGATCTGGTCGGCCATGCCTTACCTGTTACACCTGTGATATTTGATTACAAGATACAAGTTGGCAACAACTCGCTCTACAACACAGCCCCTACATACAATATTTATATTCTTGGCCTGGTGTTACAATGGTTGAAGAACAATGGTGGTGCTGAGAAGATGGAAGAGTTGTCTGTCATTAAGTCAGGTGCTGTGTATGATGTCATTGATAATTCTAAAGGGTTCTACTGCTCAGCACTTGACAAGGCATGTCGTAGTAGGATGAACGTTACATTTAGAATAGGGTGTCCTGAAGGTGACGAGGCTTTGGAAAAACAGTTTTTGTCAGAAGCAGAGAAAAGAGGAATGACTTCATTAAAGGGTCATAGAGCTGTAGGTGGAATCAGAGCCTCTTTATACAATGCATTATCTGTGGAGGAATGCATGGTGCTTGTGACATTCTTACAAGAATTCAGTGAAAAATATCAGTGAAGGAAAGACTATAGAAATCTCATGTACAAAATCTGTCCACAATAGATTAATGTGATTTTACATTAATTTTTGACAATGTACAAACCACAATCGTGGATACAATTTTGATATCAATCCATCGTAAAATAACTACTTTGAATGATTTCGAGAGTGCACTGAAATCGTAAATTAGTCTAATCCAGAAGGGTGGATATAATTCTGATGTCAATCCATACATGTAGTTATAAATACATTGTATTTGAAAGTGAATTGAAATCATATATTTGATACATTGTTTCAATATTTGGGAAAAAAATTAAACTACATTGAATTCTAGAAGTGCATTGAAATCGTAAATTTAAACTAAAGACGTCTTCTAGTCAGATCTGAACTATGTGTAGTTTTAATGGTGTTTGAACTGTGATATTTTTATTTGGTCAGAAACAATGTTGTTTATTTATATAATTACTCAGTATTGACAGTAACAGTTTTCACAAGTATTGTTAAAAATATGCGTTCGATTGGCATTTAGCACTTCTTTCAACCAAATTTCTGGTATAATGCTGTTGATCAGTTTTATTAGTTGTGAAATCAAAATACTGGTAATTGAACAAAAAAAACGTGATCTGCCTCAAGTCGCTGATAAACTGGATCACATTTTCTTGTATCGAGTACACCTCGTCGTGTGCGGAAATCAAACTTGATATTTTGAGCATTGACAGGCACTGATTGTATAGGTAGATGTAAATCTAGCTACCATGTGATCACAGCCTGGATGACATGTACCCGCTTAAAAATAGAAAATAAGATTTTTTTTAATTCGCCAGAGATAACTCTTTATTTTATATTTGTTTGTTTATACATTCAAATACTCAGAGTGGTGTGAAAATATTCGTTTTCAATATGCCAACATTTTATATGTATTTAATCTTGTTTTTTGTCACAAAATGTTATCAATCGTCAATTAGTGTTGATGGCCTTGTTTTGGTAGAGACATTTTTCCATTATTTTGTGCAAATTTTAAAAAAAAGTTTGTTAAAATACATTGTAAATCCTGAAATTCATCATATTTCGATAAAATCAGAGTAAAAGGAAAGGCACAATATTAAAAAGACCTTCATTTTATTATATATTTTTAAATGTACTTCAAATATTTTAAAAATTGCAGATAGCACCATATCATACCTACATGTAGCCATGACTTTATAAATTTATTTGAATATTCATACTTCATTTCAAAAATTGTATATACAATGTACATGTATAAGGGAGAAACAGTTCTTCAACACAACACATGTATAAGATTGGAGCATTTCATTTCATTTAAAAAAAGAAAACCCCATCGTTAAAACAGAGAAAAAACAATTTTTATTAGGTTAAATATATATATATTTTTTTAAGTCTTATTTTTTGTTAAGTTATTTTATGTTGTTTTTGGATAGTTATGTTAAGGACTTGATCAAATTGTTGATGAAATGTAAATTGTAAGTGATTGAAATCATGTTTAATATGCTATGCTTTATTATCATGTGATACAACTAAATTTATCTAGGTAAGCAGGAGGGGGGAGGACCATAGCCCCTTCCCCCATCTAAATGTAAAATGGTTTGTCACTAAACTTTAGTGTTCTCTCAGTAACATTTTTGCCAGCAGCGTTTTCATTTGTTGATCTAAATATCACCTGATAGCAGTAACAGTTTTACCAGCAGCATTTTCGTTGGTTGGTCTTACTATTACCTGACAGTAAGGTTAAAAATAGTTTTGTCTGTTGTTAATGAAGCGTATCATATTTAATGTATGAGTTCAGTCAAGTATTGTAAATAGAGATAAATATCACTGTAATACATGTCATAATATCCTCATTGTATATAATTCATGCAATCAACCAACCAAAAAATTAAAATGATCGACAAATTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00266	Aminotran_5	Aminotransferase class-V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000192	Domain	Aminotransferase class V domain	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR020578	Binding_site	Aminotransferase class-V, pyridoxal-phosphate binding site	Interproscan
IPR022278	Family	Phosphoserine aminotransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43247	PHOSPHOSERINE AMINOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004648	Molecular Function	O-phospho-L-serine:2-oxoglutarate aminotransferase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006564	Biological Process	L-serine biosynthetic process	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00831	serC, PSAT1; phosphoserine aminotransferase	EC:2.6.1.52	Carbon metabolism	ko01200	PMID: 28812709
			Biosynthesis of amino acids	ko01230	PMID: 28812709
			Methane metabolism	ko00680	PMID: 28812709
			Glycine, serine and threonine metabolism	ko00260	PMID: 28812709
			Vitamin B6 metabolism	ko00750	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_15800-0.5 global RNA-seq network