Gene detail

Detailed information of Bpl_scaf_15282-1.4 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_15282-1.4	WD REPEAT CONTAINING PROTEIN 3 WDR3	Bpl_scaf_15282	129728	153368	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_15282-1.4

ATGCAGTCCCTTGATGTTTGTCGAAAGACTTCTGGAAAAATATGGCACAGAAAACCGACACCATCATCGGATAATGGGTTGATGATACAGATCACCAATAGCCAACCAAGTACACTGTCACATGCTGGTAAAAATGTCAGATTTCTACACTCTGCATTTGATAATAATGGTGATAGTTTTGTTGCTGGTGATCATCAAGGGCACATCTTTCTTTTTGACATAACTAAAAACAGATTTTCCTTAGTTCAGAAATTAGGGCATCCATGTACTGCGTTGGCTTTTGACTTGAGGAGAAAGTCAGAATTTCTTGTTGGACTTTCTGATTACTCCTTGAAATGTTATGATGTTGATACCAAAGAAATGGTGGCGTGGATGAAAGGACATGAATCTGTGATAGGTAATATTTCAGTACATGCCTCTGGTAGATATGCATTAACAACGTCTACTGATGCAGCTCAGTTGTGGGATTTAGACACATTCCAGAGGAAGAGGAAGTTAAATATTAAAGAAGATGTTGGCATTGTACAGGTTTGCTTTCTACCCCTGAGTAATACAATAATCACTGCCTTTAAAGATGACACAATTTTTGCATGGGAATCTGATACACTGAACTGTAAATACCAGCTGCCTATACCTCCAGGGAAAAAACCTAGTTACAGGACTTTTGCAGCAACAAAGGATGGCAGACTATTAGCAGCAGGTGGAAGGTCAAGGTTTATACACCTTTGGGATCTTGATACACATAGGTTATTACGTATCGTTGAATTACCTACTAAAGTCACCTCTGTTAAACAGTTGAGCTTCTTACCAGACAAATTTGATGCCGGTCAAAATCAGACGCTAGGTGTCCTCAGTCAAGATGGAATAGTTAGATTTATCAACATTAATTCATGTAAGCTGATATTTGATATTGGCACTGTTGACAACAAAGTCAATAACTTTTCTATCAGCCCCTCAGGACGTCACATGGTATCAACAATGGAAGATGGTAGTCTTCATGCATATGATTTGCATGTTGTCTCAGAAGAAATTGGAAAGCCTCCAGCTCCTTTGGTGAAAGTTGTTAAAGAAAATAAAATGTCAGACACAGTGGCATCTGATCAGTCAACAAGATCACAAAAACAGAAGGGAGCTAGGGCAAAGGGAAAAGAAAACAGGAGGACTCAACCTGATTTCCAGTTAGAAGTAGAACTTCCTGAACAACTAAATATGAACAAATTAAAGGCGATTTTAAAAGGATATGGGGAATACCCAGCTAAATATAGAATGTTTATATGGAGATCTATATTAAGGCTGCCCGAAAACCACACAGCATATGCAGCATTGGTGGACAAAGGGACACATCCTGCATATGCAAAAATACATGAAGAATATCCTATTAAAAGTAGAAGACTTTTGCGTATATTACAGAGAATCCTATCTGCCATGGCACACTGGTCACCTATCTTTGGAGAAACTCAGTATCTACCATGTTTAGCTTTCCCGTTTGTTAAGTTATTTCAAAACAATCATTTAGTCTGTTTTGAAATCTTGGCAAGTATTATGATGAACTGGGCAGATCATTGGTTTGAATATTTTCCTAATCCACCAATCAACATTCTTGGAATGATAGAGAACGTTCTAGCCTATCATGATAAATATCTACTTCAACATTTTGTCAAATACTCCGTCACTTCACAGGATAGTAAATCACATGAGAAAAGTAATGATGGACTTAACAAAATTTCTTCTCATCCGATGTTTCAAGATCTTCAGGCTACGTTAGCTAGCGAATGTTTTCAAGCTTCAGTACCATACACATTGTGTTCCGATGAGAATATCAGTTCCGCTGATGCAGAAGTAGTACTGGATCCATCCATTGTTGCTGTACAGGAAGCACATCTACAGTATCAGTTTCAGACTCTTTCTGGTGACAACACAAAAGTTCGTGAACTGCAAAACTTTTATAGTACTAAGTGTGCTGAAATTGAAACTCAGAGATGTGATGCTATTGCCAAATTGAAAGGACAGATATTTCATGAAGAAACACTGTATCTGACAGAACTTTACAATGTGCATACTTTCCATGATCGTCAGAGAATGCACTTAACAAGTCGTGTCTCAACAAGTCTAGCACTATTAAAAGTATCTCTGCCGGACAGTAGTTCTGTAACCTCATCTAAACCAACGAAAAGTCGGCAGCTGAATGCAAGAGCTGTTGAAATCATGACAGAATGGTTTGAAAGGAATATCGATAATCCTTATCCGTCCGATAATGACAAAGAAAAGATGGCAGACGATGGTGGAATTTCTTTAGGACAAGTCAAAGCATGGTTTGCCAATAAACGTAACAGAACAAGTAACACAAAACCGAAAAAACAAAAACAGCAAGTGGAGAAAAAGTTGTTGACAATTTGTTCTGAATTAACGAATGGTGATAATAAAACTCCAAGGTTATATGGAGACATTATTCAAAAACTTTCCAACATCATCAACAGATCAACAGTGTTTAATCAAGGAACTCCTATATTTAGCCAAGGAATCATGTTGGACCCAAATAATTCATATTTAAATCCA

Transcript

Bpl_scaf_15282-1.4

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05920	Homeobox_KN	Homeobox KN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR008422	Domain	Homeobox KN domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR051570	Family	TBC1 domain family involved in cilium biogenesis	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19853	WD REPEAT CONTAINING PROTEIN 3 WDR3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_15282-1.4 global RNA-seq network