Detailed information of Bpl_scaf_13986-0.6 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_13986-0.6DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2Bpl_scaf_13986461757157-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyDUB|USP|USP

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00929RNase_TExonucleaseFamilyInterproscan
PF13423UCH_1Ubiquitin carboxyl-terminal hydrolaseDomainInterproscan
PF20770PAN2_NPAN2 N-terminalRepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR013520DomainExonuclease, RNase T/DNA polymerase IIIInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR028881DomainPAN2, UCH domainInterproscan
IPR028889DomainUbiquitin specific protease domainInterproscan
IPR030843FamilyPAN2-PAN3 deadenylation complex catalytic subunit PAN2Interproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR048841DomainPAN2-PAN3 deadenylation complex catalytic subunit PAN2, N-terminalInterproscan
IPR050785FamilyPAN2-PAN3 complex catalytic subunitInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR15728DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000289Biological Processnuclear-transcribed mRNA poly(A) tail shorteningInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004535Molecular Functionpoly(A)-specific ribonuclease activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006397Biological ProcessmRNA processingInterproscan
GO:0031251Cellular ComponentPAN complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12571PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2EC:3.1.13.4
RNA degradation ko03018PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_13986-0.6 global RNA-seq network
TOP