| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_1372-8.10 | CLEAVAGE STIMULATION FACTOR SUBUNIT 1 | Bpl_scaf_1372 | 795634 | 822045 | - |
| CDS | |||||
| Bpl_scaf_1372-8.10 | |||||
| Transcript |
| Bpl_scaf_1372-8.10 |
| Protein |
| Bpl_scaf_1372-8.10 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|CDC20 |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DWD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF16699 | CSTF1_dimer | Cleavage stimulation factor subunit 1, dimerisation domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001680 | Repeat | WD40 repeat | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR019775 | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR032028 | Domain | Cleavage stimulation factor subunit 1, dimerisation domain | Interproscan |
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR038184 | Homologous_superfamily | CSTF1, dimerization domain superfamily | Interproscan |
| IPR044633 | Family | Cleavage stimulation factor subunit 1-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR44133 | CLEAVAGE STIMULATION FACTOR SUBUNIT 1 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005848 | Cellular Component | mRNA cleavage stimulating factor complex | Interproscan |
| GO:0031124 | Biological Process | mRNA 3'-end processing | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K14406 | CSTF1; cleavage stimulation factor subunit 1 | - | mRNA surveillance pathway | ko03015 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_1372-8.10 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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