Gene detail

Detailed information of Bpl_scaf_1372-10.30 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_1372-10.30	CELLULAR TUMOR ANTIGEN P53	Bpl_scaf_1372	1002898	1026836	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_1372-10.30

ATTTTATTTACAATACCACGTGGTTTCATGGAGGCTTCCTTCATTCACAGGCTGTTTGTTTATAGTATGGTCGATAGTTAGTTGTGAGTGTTTTATCATAACTTTTCATATTCATAATCATTTGGAAAATTCATCTCTCCTCGTCCCCATACCATAATGTCACAAGCATCTGTAGCTACATGCACACCATCAGGACCTCCTTTGAGCCAAGAAACATTTGATTATTTATGGAATACACTTGGAGATTGTACAGAAGGAGGAGATTACACCCAGTTAGCATCACGAGAATCTGTAGACTATTCCTTCAGTGAGGGAGATGATGAAACAACCTTACAAGTAGAAAGATACAGAATACATGGCAATGATTCTATATCAGAACTGTTGAATCCAATTATTGCTCAAACAACGTCAGCCTCGTCTATGAGCCCAGATAGTCAAACAAATATCATTGGTAGTTCAGCATCAAGTCCATACAATGATACAATCACATCACCACCACCATATTCGCCACACACTAGTATGCAATCACCGATCCCATCAGTGCCATCAAATACTGACTATCCAGGAGATTATGGTTTCACAATATCATTTTCACAACCATCAAAAGAAACAAAATCTACTACATGGACTTACTCAGATTCACTTAAAAAGTTGTATGTTAGAATGGCTACCACATGTCCGATAAGATTTAAAAGTTTGAGGCCGCCACCACAAGGAGCAATCATTAGAGCTATGCCTATCTTTATGAAGCCAGAACATGTACAAGAGCCAGTAAAAAGATATCATCCAGCTCCCACTCATTTATGCAGATGTGAACACAAACTTGCCAAGTATGTAGAAGATGGATATACAAGTCGTCAAAGTGTTATTATACCCCATGAGACTCCCCAGGCTGGTTCAGAATGGGTTACCAACCTTTTCCAGTTCATGTGTTTGGGATCATGTGTTGGAGGACCAAATAGAAGACCTATACAGATCGTCTTATCTTTAGAGAAAGACAATCAAGTTCTGGGAAGAAGAGCTGTAGAAGTAAGGATATGTGCTTGCCCTGGAAGAGATCGTAAAGCTGATGAAAAAGCCTCCTTACCACCATCAAAACAGTCTCCAAAAAAAACTGGCAAAGTAAATATCATAAATGAAATAACATCTGTAACTTCCTGCGGCAAGAAGAGAAAGTTAGACGAAGATTCCTTCACACTAACAGTGAAAGGCAGAGAAAATTATGAAATTCTATGCAGACTGCGAGATTCCCTGGAATTGTCGTCCATGGTGCCTCAAAATCAAATTGACCTGTACAAACAGAAACAAGTGGATATAAACAGACAGATTACTTTTTCATCAACACCCAAGAAGGCAAAAATTATCGAAGAACAGGCATTTGAGTATGACATGAAAGATTTTTATCCGAGCATGGACCTAAAGAACAAATTTCCATCCAGATGTACAATGAAACCATCATCAACACCCAGGGTGATTTCAATACCAAACAATGAGAATGTCCCAGTAACAATACAAAGTGACAATCGCCAAACAACGCTCCCATTCAGTCCCGATGTCAATGGTCAGGTTACCAGTTCTCAAAATGGTGTAGCTGAAAACCATTCTAATATAAAAGAGGAACAAATGAACGGAGACCATAGCATATCAAGAATTGTGTTCGATCTCCAGAAAATGAGAATCGGAACAAGTCATAGAAATAAAATATGGAAGGCTTTGGTAGAATATCACAGCGAATCTACTATAACCATCAACGATTCACAGAGCTTACCACGAGATGCAAGTACAGCCTCAACGATCAGCATGACTTCACAAGCCAGCATCTCACAAAATTCACAGAATTCTACATATTGTCCTGGTTATTATGAGGTAACAAGATATACTTTCAAACATACCATCTCGTACACAAAAACGGAAGGATTATCTAAGAGGACTAAGTTAGAATGAAACGTGACGAAGCTGTTTTTGATACCAGTATGATGTGGTATTCAATAGGCAAAAAGTCCTTGCACAAGATGCTAGATTGGTCTATACTGATCCTAACAACAAGATTTAGATTTCTGTTGTTGCTTTGTGGTGAAGTCGATGGACAGAAGAATTTTGTACTGATAAATGCAATATGGTGCAGATGTTATTTTCTACTTTGGTAGATAACTTGTTTTACTATAAATTTACACAAAATATTAATTTTGTATGTAAATTGCAAACAGTTTGGACAGAATCATAAAATGGCTATAATGTTTTTTTTTAGAAGAAAATATATAAATGTGTATGTTATATATTTATTTATTTATACTGTAAATGTTCTGTGTTCTGAACTTATGTGTTCTTGTTGTACCTTTCTTACACATTTTGCTGACATTTGTTGTCAAGTCCTGAATGTCACTATATATGGTTGTATAAATAAAAGAGACAGAGTTGTTTATTTTTATGGGAATAAGAATTTGACATACCATTTAAAGCATCTTTTGTGATGTGGATATTGTAATTTCATGTTGCGGTAGCCATGGCAACGATGATATGGTAGTTGGATTTACTTCTACCTAAGCAATTAATGGTAATGCCTATCATAATTATTAGTTTGGGAGCTTGAAATCCCCTAAATGACAAGGTGTCCTTGATATAACATCATATGACTACTATGTGTAGATGCTGTGGTAGCCTATTTTAAAGGTGAATTTAAATGCTCAACTTGGACAGGGTATATTTGAAAGTACAGTGAAGCAGTCTAAACTGAATCTCATTGGGTCCAGCTTTGGTATTTGGAACTTGATCAATTTACACAGGTTAAATTAACAAAGTTTTCCTCCTATAGGATTTTATTTATTAAAGATTTATACATGATTCTGGTTTATTTTATATGGTTCAGTTTTAGACAGCTTACACTGTACTTCAAAGTCTTCAATTCAAAGATTGAAATTCTCATCTTCTATTACAGTAATAATCATTTTCATATCCTTATATAATTATTAAAATGTCTCTATATCTGAAGCTAATAATTTCAAAAGAAGGTATTAGGTCAAAGATCAAAGGTGACACAGAGATAAAGAATAGCCATTTAATTTTTGTCCATTCTGATATTGTTTGTTGATGATAGAAGACAAATGAAATGCAGACTGTGTTTATATGTTATTGAATTGCCTATATGGTGTGCATTTCATTTGCTGTTCTTCTAGTATAATCCATGAAGATTGAGTATGACAATTCCACTATCAATTTATACACCATTTATAGCTACTAGAGTATGCAAATGATATAAATGACTTCTTACATATTTTTTTAGGACGAACAAATATTTATAAAATTAAAATTGTTGAAGAAACGAGAAAAATATCTTTGTTTCTGCTTTTGACATAAAATATAACTGTGAAATATGGTCACATAAGACAGGTGGTTGCTTAATACAGGTTTAATTGATATGAAATGCACTGTGAAGGGAAATGAAAATTAAGGTCACATAATACAAGTTATTGCTTAATAGAGGTGGTCACTAAAGCAGGTTTGACTGTATTGTACAAATGAATGTTTTGTGATCATCTGCAGCTGAATAGTAAATATAATGTATGAATTGTTAGTGGGATGTATTACACTTGGTCTTCTCAGGTTATATGTATTATATAGTGTTCAAATTTTATAATGAAAATATGTGTTCAAGAGAATCATTCCAACATCGAACTTTAAAAAGTGTTCAACATTAAAATCATTATATTCATTTTTGTTGTTGTTTGTTTTTTTTTTTACTGCTGATGAAATAACAGTGCTATAGATGACATACGTATGTAACATGGGGATAATTAATATTGTAGTTACTTGTCACATATGGTTCTAAAGTTACCCTGTCATTCTTTTCAAATAAGAAGAAGATTGTTATATATGACATCCTAAGTAAATTCAAATAGTAAATAAAAAATGCAAGTTATTTTGTTTTAGTTTATTCTATTTTGGTCTTTTTATTATTATTTTATTTTTGCATAGTATTTACAAAGGTAACTATTACTATCATTTTTAGAGAAAACAAAAATTACATTCTGAAAGTAAACCTCCCACTCCCTGACCTAAAAAACAAAAACAAAACGTGTTGTCCTAAAAGGAATAACTCTTCATTATCATTCCATTCATATTCTTCATTCAGTTTCCGTCCAATTATCATTTGAATGTAACGGTGTTTATACTTTGTTTACGGTGATAGCCAATAGATCGTTGTTTGACATATAATATTCTATAACTAATTTCAGACAACAACTTTAAAAGAGTATTATTTTAAACACATGACATATATCTACTTTTGCCGACAAAGTTAGATTTGAAGCCCATTAACCAGTTCGATAGGAATTTCTAACGTGTAATTATTTTCCGAACCAGGCTATTGAACAAAGTTTTACTGTGCAATAGATATTAAAAATAAAAACCTTTGACAAGGTAACCATGAATATTTAATATTATTTGTAAAACAAGAAAATGGGCTTAGAAAAAAAACAATATAAAATTTAAGAAGTGTTTGTTAATAATACAATTGTATTTATCGAGTTTTGTTTGTTTTAATAATTATGTTGATGTTTATATTTTATTTGTTTTTGTTTGTAAGATGCATTTTATTAAGAAGAAGTTTTACAGTTCTTATCCTGCAATCATTGACTTGCGTTGACTAATACATGTATTTGTTTTGCTATATCCCCATTGAATGTATAAAGCTTTCATTGTGGTATCACAATGCTGTCTTGGTATTTTACTGATGGTGTCAAATAATAGTATTTGTTTGTGTGTCAAAATATGCTGATTTTTTTTTTTTTTTTGAGAATGCTGGTACATCTTTTAAACAGCATATTCCGATATATTTTGTTAATATTAAGATTGCAGGATAAATAAAATATTCAAACATTGACAGAGATATCAGTTTTATTTTGTATTCAGTGAACTTTGTATTTCCACCAGTTTTGTAAGGAATGTGATATTCTATTGCAGTGTATGTATATTTTATACCTATATGTTTTGAACAGTGTTAATTTATGTGAATTTATTGTGTGATATAACACGATGATATTATCTGATTTATTTTCTGCAATTCTGTGAAAAGGTATTTTCAGTATTTCACAAAAGTGTACACTTCGGTGTATGTATATGTATATTTATAAGTGAGAACAGGCAGAAAAAATAACTGATGTTTGATAATATGCAATGTTTACCAGTACTATTATAATTATTAAACAATGAAACCTTTCTCGAGAGAACTCTCTTACAACAGAACAATCTCGTTTTGTAAGACCACTTCAAGATTTCACAACTCTTTATTTTGAATATTAAATACTGTCAAACCTATATTAAGAGGTCACCTTTGGGACAAAGAAAAAGTGGCCTTATAAGACAGGTGGCCTCTTAAAAGAGGTTTAATTCATATGGAATTTTCTATGATAGGACAAGAAAAAGGTGAACTTTTAATACAGGTGACCACTTGGGCAGGTTTGACTGAACAACTTTTGATAAAAGGCTGGACAGAACAGCATGATTATTTGAAAATTTTGACTTTCATTTGATAAAATAAAAGGGTTTAGACATCTTTTGCAAGGTTGATTTTAAATTATCTTTACATGTTTTTTTTTATTATTATTAGTAATTCTTTGTAATTTTTTCCATCATTTTCATGAATGGATTATATAAAGTTATTATTTAAATTGGGCCATAATTCTACCCTAAGATAGCAGGGGTCATTATGTTTTTCAATTTTTGGTCTAATGGACCTTGAAAAACATATTGAAGTTGAGAAACTTTTGTTCAAATAGTAGTAAACTACTCAAAGAGGAAAAAGGGGAGGAATGTTATCATTTTTATTTACTGTTGCTTAATAACAATAATACTGTTGCTTAATAACAATAATCTGTTATTGAAGTGTATTTGCACTTTAAACAAAATTCATGGAACCGCAACTCACTGGCCATTCATGTAAATATATTTAAAATTTGTTGATTTGTTTGTGAATTCTCTGGTTCACTGATCTTTGGTGCTATACGATCACAAGTACTGTAATGTAAAAAATAAACAACAGTAGTTTCATTATTCAGTGTGACCCTTGCATCCTTTGGCAACCGTAGGTGCATCCCACATTGGTTCACACAGTTGCAAGCTGTTCTGGTTACCAGATGTTGGTTACCATTCACTTTCTTAAAACTCTACAAAATTACACACTAGAATTGTCTTCAACATATTTCTTTGAGCAAATAAACTATGCAAAATTACTCACAATTCATGACATAAATCAAATTTTTATTTTAAATATTAATATTTGTATTACCATAAACAGCCATGTATTAGCTGCATTTGTGCATTATCCGTACTCCTTTTTCACTCCAAAATCTTTTGGGTATGTAATCCACATGAAGTGTTTATCGTGGAGACTTCATTTTAAAATCAATAGTTAATTGTAAAAGTATGTGAATGGTCAGTGTGGTTCATTGTTGTATTTTCAATATATATATAAAGGGTGCGTGCAAGTAATCATAAAGTTACATGTAGAGAAATCCATGTTCCATATCAGTTTGTTACTTACTTTGTGCTATGAAGAACATTATACAAATAAAGTATCTTTTATAC

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	P53

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00870	P53	P53 DNA-binding domain	Domain	Interproscan
PF07710	P53_tetramer	P53 tetramerisation motif	Motif	Interproscan
PF08563	P53_TAD	P53 transactivation motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002117	Family	p53 tumour suppressor family	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR010991	Domain	p53, tetramerisation domain	Interproscan
IPR011615	Domain	p53, DNA-binding domain	Interproscan
IPR012346	Homologous_superfamily	p53/RUNT-type transcription factor, DNA-binding domain superfamily	Interproscan
IPR013872	Domain	p53 transactivation domain	Interproscan
IPR036674	Homologous_superfamily	p53-like tetramerisation domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11447	CELLULAR TUMOR ANTIGEN P53	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006915	Biological Process	apoptotic process	Interproscan
GO:0051262	Biological Process	protein tetramerization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10149	TP63; tumor protein p63	-	Hippo signaling pathway -fly	ko04391	PMID: 28812709
			Apoptosis - fly	ko04214	PMID: 28812709
			MicroRNAs in cancer	ko05206	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_1372-10.30 global RNA-seq network