Gene detail

Detailed information of Bpl_scaf_13642-3.30 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_13642-3.30	CADHERIN-87A	Bpl_scaf_13642	331542	344555	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_13642-3.30

ATGGCTTCAATATTATACAGACTATGTCTATTATTGACTTTGTGTTGTTGTTTACAATGTCAGGAACTATCTTATGACCTCAAAGAAGAACTACCAGCTGATTCGTACATCGCAGATGTGAAAACGGATGCAAACTTAAACATACCGACAGCTGAGGACAGTGATGTTCAATTTAGCTTTCTTACGACGGATCAACAGTACGAGGATTTTTTTCACATTAACGAAAGACAGAGTTCTCTGTACACGGCCCAAAAAATAGACCGTGAATCCATTTGTTTGTACACGGCGGACTGTCAACTTGGACTTGAAGTTATTGCTAGAAGTACGAAAGGTAGCTTTTATCGGAAAATCAAAGTCACTATCCATCTTATAGATGTTAACGATCACAGTCCGACATTTTCTGTATCGGGTGTCAGTCGTGAAATATCTGAAGGGGCCCTTGTTGGTACATCGATACATATCTCAGATGATGGCGCCGGTGACAGAGATTATGGCATATTAGGTGTCCAAACTTATAGAATTGATGATCAATCGGGAACACCGCCTTTCACAGTAGATTTTCAAAACAACGATGGTACCAGTACTATAGTAAAATTAATTCTCAATCAACCACTGGACAGGGAAATTCAGGATTTTTACAGTCTGACAATAATTGCTGAAGATGGAGGAAGCCCAAAGAAATCTGGCTCTATACAAGTAAATATTACCGTTACGGATGTTAATGACAACTCACCCGTGTTTTCACAATCTATGTACAATATAACTATTAATGAAAACCACCCCGTAAATTCATCAATTCTTAACGTTACGGCAACTGACAAAGATCTCGGTGTAGATGGGGAGGTTTACTTTAAATTGAGCCCGAGACAGGAACAGAAAAACCTGGAACTTTTCGCCATTGATGAAAATACGGGAAATTTGAAAGTTGTAGCCTCATTAATATATGAGCCAAAGGAAAATTTCACAATTATAGTTGAGGCTTACGACAAAGGGCAACAGTCTAAGAAAAACAAGGTAAATGTTTATCTACATGTAAATGATGTACACAACAACCCTCCTCAGATAAACATTAACTTGTTATCAAACGCAGACTTCGCAGCTATTCCAGAGGATGCTAATTTAGACACGGCTGTGGCTCATATAACTGTATTTGACCCCGATAACGGGCGTAACGGAATTGTGGAATGTACTTCAACTAGTGACAAATTTAAATTACAGAGATTTGACGTTCACGAATATAAAGTTGTTATCAAAAGTCAACTCAACAGAGAATCTCAGCCAGAACATCAAGTTTTCGTCAGTTGTCATGACAACGGTTTGCCCCCTTTGAGTTCAACAGCTGAGTTCACGGTCAAGGTCTTGGATGAAAATGACAATAAACCAATGTTTACAGCAGCCACATACAGAGTTAGCATACAGGAAAATAACCCGAAGGGAGCATCTCTTTTTAAAGTATCAGCGAATGATTTTGACTCTGGTAAATATGCCGAAATAACGTACAGTATGTCGTCAGTTCCAAATTATGACTTTCATATAGATTCTTTATCCGGTCAAATTAATGTTTTGTCCGTTCTGGATCGAGAAACCGCACAAAAAATTCATTTAACTGTTTTTGCAATGGATGGTGGTTCGCCATCGCTTACCGGAAGTGCGGATGTTGTTATTACCGTATCAGACGATAACGACCAAATTCCACAGTTTGTTGAGGTTAATCCTGTATTTTCTGTCCCTGAAAATTATAATACACATACATCGATAGGATTTGTTAGAGCAACAGACGACGACGAAGGAGATAATAGTAAAATTACATATTCTTTGTCACCAGAATATATTGTACCTTTCATAGTCTTGTCAAACGGCACTATACAAACGACACAACAACTCGACAGAGAAAATATCAGTTCGTACAATTTTAAAGTTTTTGCCACAGACCACGGCAAAATACCAAATATAAACATTACAAACGTGACCGTTAACGTTATGGATGTTAATGATAACGGACCAATTTTTACGTTTCCTAATAACAAAAACAACACCATCACCATCTCGTACCAGACACAGTCAAATACGGTAATCGTAACAGTTGGTGCATTGGATGAGGACCACGAAAATAATGCGCGTGTGACATATTTTTTCAAAGAGAAAACATATGCGAACATGTTTCAAATTAACAGCCTTTCAGGACGTATAACAATTGTTCGACCACTATCTGTGCACGAAGCTGGAAGGTACAGTATTACAATTACCGCACAAGACGATGGAACACCACCGATGATTTCCGAACAAATGATAAACATTTTGGTTACCACGCAATCATTAGGCCACAGTATAAGCACTGAGGTTGCAGAAGATGGCCGGCAATATTTCCTGATAGTTGTTGCGATATCTTGTGTAACTGTGGTAATTGCCGTTGTAATAATACTTACAATATGTCTGATCAAACGAGCTGACCGAATACGTCAGAAATATGTAGAATCGCACAAGGATGAAACCGATGGCGACAAAGACATGGACTCGAAGAAAACAGCCAGTTTCACAAATAATAAGAACACTTTTGATCGGTTTTCACATGGTCCCAACAATAATGGCGATGATGGCGGGAGGTTGTATTCGACGGTAGACAGGAACTCTCTACAAAATGAGTCTTCCTTGAATCGATTTAAAAATGTAGATCTCAACAATAAAGAATTATGTGACAGAAATAAGAATAAGTTGTCATCACTTCAGCTTCATCAACAGCTATTAGAGACACAAAACAAAAACAGAAGACCAATGGCATCTCAAGGAATATTAAAGAAATTAGATGGAGACAATAACAGTGACCTATCAGCAGAGGTCACCACCAGCGACAGTGGACGAGGTGGCAGCGAGGACGACCTCAACACCAGTACTGTTCTCTCATATTCAGTAGAATTCGACCAACTGAAGCAAAGTCAAAGCAGAAATTTTTCAACGTTTTACCAGTCCAGCCCACGTGGTAGGGAGCACGCGGTCTGTACAACCACCAACACGTACCATCAACCAAATTTTAAAAATATGACATTGTCTTCAGATAACTTTTATAATTATGAAAATAGTGCTAAAGGAATATATCCAAAAGGAATTTCTAGAAATACTTCTATGACCAGTGGTCATGACGACAGCACAACTACTTCCGGAAGTTACATCATAGATGAGGATGATGAATATGTAGATATGGTCCAGCCTAGTAAACAATGTATTGTTTGA

Transcript

Bpl_scaf_13642-3.30

ATATTATACAGATTTTTACAGAAAAATGGTTTTCAAATGAAATTCGACTAACAGGATTACCTTAAAATAACCACTGGGAACTTAACAAACAAGAAATTGTTATTCTGTGACTGCTTTTTCTAAGATGCATTTTATAGTTCAGATTTAACATTTTTCAGGAAAAACAACAGACATCACTTGTTGCTCAAAAAAGAAAACATAGAACATGGCTTCAATATTATACAGACTATGTCTATTATTGACTTTGTGTTGTTGTTTACAATGTCAGGAACTATCTTATGACCTCAAAGAAGAACTACCAGCTGATTCGTACATCGCAGATGTGAAAACGGATGCAAACTTAAACATACCGACAGCTGAGGACAGTGATGTTCAATTTAGCTTTCTTACGACGGATCAACAGTACGAGGATTTTTTTCACATTAACGAAAGACAGAGTTCTCTGTACACGGCCCAAAAAATAGACCGTGAATCCATTTGTTTGTACACGGCGGACTGTCAACTTGGACTTGAAGTTATTGCTAGAAGTACGAAAGGTAGCTTTTATCGGAAAATCAAAGTCACTATCCATCTTATAGATGTTAACGATCACAGTCCGACATTTTCTGTATCGGGTGTCAGTCGTGAAATATCTGAAGGGGCCCTTGTTGGTACATCGATACATATCTCAGATGATGGCGCCGGTGACAGAGATTATGGCATATTAGGTGTCCAAACTTATAGAATTGATGATCAATCGGGAACACCGCCTTTCACAGTAGATTTTCAAAACAACGATGGTACCAGTACTATAGTAAAATTAATTCTCAATCAACCACTGGACAGGGAAATTCAGGATTTTTACAGTCTGACAATAATTGCTGAAGATGGAGGAAGCCCAAAGAAATCTGGCTCTATACAAGTAAATATTACCGTTACGGATGTTAATGACAACTCACCCGTGTTTTCACAATCTATGTACAATATAACTATTAATGAAAACCACCCCGTAAATTCATCAATTCTTAACGTTACGGCAACTGACAAAGATCTCGGTGTAGATGGGGAGGTTTACTTTAAATTGAGCCCGAGACAGGAACAGAAAAACCTGGAACTTTTCGCCATTGATGAAAATACGGGAAATTTGAAAGTTGTAGCCTCATTAATATATGAGCCAAAGGAAAATTTCACAATTATAGTTGAGGCTTACGACAAAGGGCAACAGTCTAAGAAAAACAAGGTAAATGTTTATCTACATGTAAATGATGTACACAACAACCCTCCTCAGATAAACATTAACTTGTTATCAAACGCAGACTTCGCAGCTATTCCAGAGGATGCTAATTTAGACACGGCTGTGGCTCATATAACTGTATTTGACCCCGATAACGGGCGTAACGGAATTGTGGAATGTACTTCAACTAGTGACAAATTTAAATTACAGAGATTTGACGTTCACGAATATAAAGTTGTTATCAAAAGTCAACTCAACAGAGAATCTCAGCCAGAACATCAAGTTTTCGTCAGTTGTCATGACAACGGTTTGCCCCCTTTGAGTTCAACAGCTGAGTTCACGGTCAAGGTCTTGGATGAAAATGACAATAAACCAATGTTTACAGCAGCCACATACAGAGTTAGCATACAGGAAAATAACCCGAAGGGAGCATCTCTTTTTAAAGTATCAGCGAATGATTTTGACTCTGGTAAATATGCCGAAATAACGTACAGTATGTCGTCAGTTCCAAATTATGACTTTCATATAGATTCTTTATCCGGTCAAATTAATGTTTTGTCCGTTCTGGATCGAGAAACCGCACAAAAAATTCATTTAACTGTTTTTGCAATGGATGGTGGTTCGCCATCGCTTACCGGAAGTGCGGATGTTGTTATTACCGTATCAGACGATAACGACCAAATTCCACAGTTTGTTGAGGTTAATCCTGTATTTTCTGTCCCTGAAAATTATAATACACATACATCGATAGGATTTGTTAGAGCAACAGACGACGACGAAGGAGATAATAGTAAAATTACATATTCTTTGTCACCAGAATATATTGTACCTTTCATAGTCTTGTCAAACGGCACTATACAAACGACACAACAACTCGACAGAGAAAATATCAGTTCGTACAATTTTAAAGTTTTTGCCACAGACCACGGCAAAATACCAAATATAAACATTACAAACGTGACCGTTAACGTTATGGATGTTAATGATAACGGACCAATTTTTACGTTTCCTAATAACAAAAACAACACCATCACCATCTCGTACCAGACACAGTCAAATACGGTAATCGTAACAGTTGGTGCATTGGATGAGGACCACGAAAATAATGCGCGTGTGACATATTTTTTCAAAGAGAAAACATATGCGAACATGTTTCAAATTAACAGCCTTTCAGGACGTATAACAATTGTTCGACCACTATCTGTGCACGAAGCTGGAAGGTACAGTATTACAATTACCGCACAAGACGATGGAACACCACCGATGATTTCCGAACAAATGATAAACATTTTGGTTACCACGCAATCATTAGGCCACAGTATAAGCACTGAGGTTGCAGAAGATGGCCGGCAATATTTCCTGATAGTTGTTGCGATATCTTGTGTAACTGTGGTAATTGCCGTTGTAATAATACTTACAATATGTCTGATCAAACGAGCTGACCGAATACGTCAGAAATATGTAGAATCGCACAAGGATGAAACCGATGGCGACAAAGACATGGACTCGAAGAAAACAGCCAGTTTCACAAATAATAAGAACACTTTTGATCGGTTTTCACATGGTCCCAACAATAATGGCGATGATGGCGGGAGGTTGTATTCGACGGTAGACAGGAACTCTCTACAAAATGAGTCTTCCTTGAATCGATTTAAAAATGTAGATCTCAACAATAAAGAATTATGTGACAGAAATAAGAATAAGTTGTCATCACTTCAGCTTCATCAACAGCTATTAGAGACACAAAACAAAAACAGAAGACCAATGGCATCTCAAGGAATATTAAAGAAATTAGATGGAGACAATAACAGTGACCTATCAGCAGAGGTCACCACCAGCGACAGTGGACGAGGTGGCAGCGAGGACGACCTCAACACCAGTACTGTTCTCTCATATTCAGTAGAATTCGACCAACTGAAGCAAAGTCAAAGCAGAAATTTTTCAACGTTTTACCAGTCCAGCCCACGTGGTAGGGAGCACGCGGTCTGTACAACCACCAACACGTACCATCAACCAAATTTTAAAAATATGACATTGTCTTCAGATAACTTTTATAATTATGAAAATAGTGCTAAAGGAATATATCCAAAAGGAATTTCTAGAAATACTTCTATGACCAGTGGTCATGACGACAGCACAACTACTTCCGGAAGTTACATCATAGATGAGGATGATGAATATGTAGATATGGTCCAGCCTAGTAAACAATGTATTGTTTGATGCAGTGCATTCTGGGAAAAAAAATGACGCTTACTCGGTGCTATTATCCATAAGTACGTTTGACATCACTATGCCGACATGAAACGCCTTGATTATGGGGATGCTGGTATCCAAGCTTATAGTATAGTTTACAGTTGTGTTGCAAGTAACAGATTTACCGAAGAAGGATAAACATGGCGCATGGAACCAGAGATTTACTCTCCCCAAAAATCTCCAGCAACTATATATTGTACTGTGTGATTGTCAAACATAAACTGTAATATAACAATGATAATTATTATTAATACTTGTGCCAAAAATATTAAGTGCAATAATTTTATATTTATGTGTTCATAACACCAATATAGTCCCAAGTTAATATTCCACAAATGAATGACTATTCTATGTAATTGCCAATATGTTCAACATTGTACTGATAAAATCAGTGCAAATTAAAAGAAATAATTGTATTTCTGTGTTTATTGTGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF08266	Cadherin_2	Cadherin-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126	Domain	Cadherin-like	Interproscan
IPR013164	Domain	Cadherin, N-terminal	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR050174	Family	Protocadherin/Cadherin-related Cell Adhesion	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24028	CADHERIN-87A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16498	PCDHD1; protocadherin delta 1	-	Protein phosphatases and associated proteins	ko01009	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_13642-3.30 global RNA-seq network