Gene detail

Detailed information of Bpl_scaf_13605-4.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_13605-4.6	UBIQUITIN LIGASE E3 ALPHA-RELATED	Bpl_scaf_13605	407665	442989	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_13605-4.6

TTAGTAAGAAGATTTGACAATGCTGTGATATGTGGATTGGTGTGGACAGCCAACTTTGTGGCATATAGATGTAGGACATGTGGTATTTCACCTTGTATGTCACTATGTGCGGATTGTTTTCAGGCAGGTAACCATGAAGGCCACGACTTTAACATGTTTCGTAGTCAGGCTGGTGGAGCTTGTGATTGTGGTGATGTCAGTGTTATGAAAAAAGATGGATTTTGTACCCGACATGGACCTGACAGACAGTTACAGAGTTTTACACCTCCTCAGGATTTATTGATAGTAGCAGAGATTATGATGCCAAGGATAATATTACGATTATTACATCATCTTAGGGATAATTCTAGTGCAGAAATGAAAGATACATATCAATTGGATATGCAGGATGCTGACCAGTTCTTGAATTTACTGCACACGCTCAGTGACATGGGTGCAGCCATGAGAAAGGTCATAGGTCATGCATTGACCTCTTTATCTTTATATAAGGAACTGACTGAAGGTATGCCAGGCTTATCCCAGTCCTTAGAACATAATACATTACTTGATGAGTTGACATTTTGGATGGTTCAGTACGAGTTCCCACAGAAAATTGTAACGTTACTGCTGAGTTTGTTACCAGATGATAATTATAAAGAGTCTTTTACCAGGGCCTTTATAAGACACTACAGCAGAATGACCCTGGTTTTGATAAATGGTTTAAACAGACCTGCCATATCTAACAGAGTAGTCCACATCAGTGTTCAGCTCTTCAGTAATGAGATTCTAGCTCACAAAATGGTGGAGGAATATAATCTGTTATATATTCTGATTGTTAGTCTTACAAATATGTTAGAGAGCATCTTAACAGAGAGCTCTCTACAAGATACTCAGTCTAACTTCCACATGGTAGTAGATTGTGCTAACATAGCAATGAAAGAACATTGTTACTGGCCGATCGTTAGTGACCTAATAAATCTGCTGTCACATAAAACAATTACAACAAAGTTCCTGTCTGACACTAGACTGGTTACCATGTGGTTAGACCTGTTGAGCTACCTACAGGGAATGAATCTCAACAACAGGGAACTCAGTCAACATGTAGAGTTTGAATCTGAGACCTACTATGCTGCTTTCTCTGCTGAATTAGAAATGGCTTCATCACCCATGTGGTCGTTGATCTCACACTGTAAAACTAAAGAGGCAGCAGAATTAACCAGGACTATGATAAAGACATGTCTAAACACCTTACAGGACTGGTATGATGCCATTAACTGTAAAGATTCTATCAAGCCTAATCCTTATCAGCTGACATTCCATTTACCTCTACACAGATACCTGGCCTGTTTTATGGTTCAAGGAATCCAGACACAGGGACTTCATCTCAAAGATATACCTCTGTCAGAGAAAATGTTAAAAACTTTGTTAATACACCCTTTACAGATACAGGTTGGAATAGCAGAGATCTACAGTCAGATGTGGGTCAGGAATGGTTTACAGATCAAAGGTCAAGCTATGACCTACATACAGTGTCATTTCTGTTACTCTATGGTGGATGCTGATCTATATTTAATGCAGGTTTGTGCTTGTAAGCTGGATGCAGATTATTTTGTGAAGACGGTGTTAGAAAGATTCCACATAGAAAATTATCTGTCATATTCTACATCACCTCCTCCCATGAATGTTAAACTAGAAGCAGAACAGGAGCTAGCCATGGTGGATGCTGTCTTGTCTTTCTTTAGTACATTACTGGCTGTTAGAACTTACCTAGGAATCAAAGAAACAATGTTAACTCGGTTAGAGATGTCCACGTTACTATGTATGGCAGACAGACAACATAGTCAGTTGATGGATCTCATGCCAGAGAAATCAGGAATGACGGGACATGGTAAAGAATTATTTGAACCTACTCTTAAAGAGGTAGCTGATTATAAAGCTCCTAATTTAGAATCTAGTGGTGGACTTCAACAGGGAACCTATAAACCTAAAGGTGAAATTTGGGAAAAAGATTTTGACCCAGTTCATGTAGCTATGAGAGCATTATATAAAAAAGATTTACAATCAGCAATGGATAGATATACAGAATATGTGAAACAAACAGGAAAATTTAGTGGTAAGACATCGCCATGGCCACCATTCAGACAACCAGGGGAGATAAATCCAGAATATAAAGATATGTACTCAATACTACACTGTAGAACTATGCATTCCTTCCTGTTTACAATTTTACATAAGGCTTTATCTACAGCTAGTATGCCAGATAGTATCTTATACCATGCTATACATCTACTGGATCTGTCTCTCTGTATGCCTCAACCTGATACCAGTCGCAAGACAAAAAGTTTCAATGGCTCTGTACATGACAAGGAGTATATGGAATGGTTTTCTGGAAGTAATATTTTACAGAATGCCAAGGAGATCATCAGAGAAGTCTTGGTACCAATACCACTGGATGATACACAATTCTCCCTTTTATCTAGTCTAGAAGAAATGTTCCACTTGGCTCCTAGTTCTTTATCAACTCACTCAGGACAGATCCCAGTAGTAAATCCCGTCCCGGTACCAACAGAGATTGAGTTTGACAACGATCCTTTCCCTCTGGTTCCCATTCATAATTTACCTGGTCCGACTAGTGTCAAGCATGACTCACCTCAGTTTGAAAATAAAGGTGTCGAAACAGAAAAAGCTCAGCATACTATCCTGCCAATTAATGAGAGTATAATATCGTTATTGTTTAAACTTCATGCAAAATTATCAGGAAAGGAAGGACAATATGTACCTCTGTCAAGGTCAAACCGATCAATCAGTGATGCACCGATTGGTGATGGAGCTCATTTTGTTGGTAGAGTTTTAGATAAGTTGTCACATCAGAGTACAAGCTGTGCCAGAACCATTGAAGAGCTGTATAGTGTGACGAGTCCCAAAAAAGAATGTAAAAAAGACGACACAAAGGATGACGAAAGGTTGGTTCTTCTTATTAAATATTAG

Transcript

Bpl_scaf_13605-4.6

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|UBR-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02207	zf-UBR	Putative zinc finger in N-recognin (UBR box)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003126	Domain	Zinc finger, UBR-type	Interproscan
IPR039164	Family	E3 ubiquitin-protein ligase UBR1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21497	UBIQUITIN LIGASE E3 ALPHA-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071596	Biological Process	ubiquitin-dependent protein catabolic process via the N-end rule pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11978	UBR3; E3 ubiquitin-protein ligase UBR3	EC:2.3.2.27	Ubiquitin system	ko04121	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_13605-4.6 global RNA-seq network