Gene detail

Detailed information of Bpl_scaf_12819-1.18 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_12819-1.18	STEROL REGULATORY ELEMENT-BINDING PROTEIN	Bpl_scaf_12819	157403	170269	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_12819-1.18

ATGGGTTTGATCACATTGTATGAAATAACTGTAGCTTCATATCCTTTCCATTTTCAGCTTTTATTACAAGCACAGCAAGCACAGCAAACGTCAAAATCATCACCAAATGTACAACCGACATCCAACACCATCATCTGTACCCAACCCACCATTATTCCCTCAGTCACTATCTCCACACCTAGCAGTGTTCCCTCCACAAGTGTCAATCCGTTACAAACGGTCGTGACGAATTCTGGAGCCATTTTAACGACCACCTCAATTCCAATACAGGTTGTCGATGGTGACAAAGTACCTATTAATAGACTTGGTGCTACTAATAGTAGAGGTCCAAAGAAGGAAAAACGTACCACTCATAATGCTATAGAGAAGAGATATCGTCTTAGTATTAATGACAAGATCATTGAACTGAAAGATTTACTAAACAAATCAGCAATCCTGAAGAAGGCTATAGATTATATCAGATTTCTGCTCAACACTAATGCTAGACTTAAACAAGAAAATATGGCACTTAAAATGGGACAGAAAAATAATGTAGAAGATTTATTAAAGACAGGATTAATTACTCCTCCGAGCTCCTTTAAAGGCTCTCCAGTACCTAGTCCTCCTGGATCCTATGAGTTTGACTCGGCTGGAAGTCCTGGCTCGGACTCAGACTCCCAGATGTCAGACTCTGGCTCTGTTGGTGGAATGGCTGACAAGTCCAGATTTGCTTTGTGTGTGTTCATGTTTTCTATCTTGGCTTTCAATCCTTTTGGGTCTATGCTTGGATCTTTAGGGACTGCTAGAGGAAGTTATGGTGGATCAAATCATGGAGGAAGAACTTTGTTAGGATTAAATGAATCAGACTCTGCTTGGTTTGACTGGATGTTCCCGACTTTGTTTTTGTGGCTGTTAAATTCTATTATTTGTGTTGGTGTGCTGGCAAAGTTGTTTATCTTTGGTGAGCCTGTTGTGAAGAAGAACAGCGTGTCTGCGATGTCATATCTGAGACATGTTACACAGGGAGATATTCTCTTATCAAGGGCAGAATATTCGTGGGCATCAGAACAGTACAGAAAGGCTTTGAAGTGTATTGGTCGACCATTACCAACATCAAATCTCGATCTGTTTGCTTCCTTAGTTTGGAATCTTCTAAGACAAATCTCCCATCAGTTGTACCTTGGCAAATGGTTGTGTTTGAAGTCGGGTTCAGTCAGAAGAAAATCGAATGATGATATCAAACTGTCAGCAAAATATGCTGCAACAGTTTATCATAAATTAAACCAGATGCACATGACAGGTCATATTGCTGGTGGAAAGTGGACAGGTTTAAACATAAGTTTATGTGCTGTAAATTTGGCCGAGGCTTGTGGAGATTCCATGTCGATGGTACAGTTAGCTGAAGTATATGCTACATCAGCTACTAGACTACAGATAAATCAGCTGTGGAAAACACTTTTCCTGTCTAGATATTTCTTGGGTAGAGCAAGGAAGTTATGTTCATTGACAGCAGACCATGTTCCTGCTACTTTACAGTGGTTGTGTCATCCAGAGGGACATAGGTTCTTTGTAGATCACAAATGGCACATTGGTGGCAAAGAGAGTCTTTATACATCACTTTGTGACCAAGTTGATCCGTTGGAGCACATCACCCAAACATTCAGAGAGTTCCTTGTAGAAAAGGCTTTCTATAATTTGTTGTTGCCAGAGAAGAGACACCCAGGTGGTACCACACAGGAGTCTGAGGTTCTGTTGTATACTCAGCTGTTGACAGATGCAGCAACAGGACCGTCTATAACCCAGCTGACTGGCCCTGCTTCTACCACTGGCACAGATGAGATTGCTAAGTGGTGGTCTTCTATTATAACTGTTGCTATGTACTGGTTGTCAGGTGATGAGGAGAATGCTGAAAGGAGTTACTCTCAGTGTGATGCGTTTCCACGAAAGTTGCAACAATGCGATGATCCCCTTCCCAAAGCTTTACTGCTAGCCTTCAGGGCCAAGAGGAATGTCATGAAGAATTGTCACAGTTCATCACATTACATCAGACAGTGTGATAGAGCTGGACGACTTCTCAGAGAGAGCCTTAAATTGTCATATGACAAGGAGAATACAAATATTGTAAAGCTTACACAACTACTTGTATGTGATTGGTTGTTGACAACAAGAACAGAGGTCTGGGAGAAGAACAAACTAACAGAGGAAACTTACACAAGTTCACAGACAGAACTTATAGCATTTCAACAAGATCTAGCTAGTCTTAGAAAACTGGCTCAAGATTTTAGACCTATTTTATCAAAAATATTTTTACATGAAGCAACAGCCAGAATGATGGCAGGGGCTAGTCCAGGTAGAACACAACAATTATTAGAGAGAAGTCTGAGAAGACGACATAAAATAGCAGAATCCAGTGATACAGACAGTGATCTACCAGACAGGGAACAAGCTAAAGCTTTAATGATGGCTGGTTGTCACCTTCCTGACACTGGCGAAAGAGTGACGCTGATTGGCGAGGCCAGCAAAATATACCAGGCCATGGGTGACAAGAAATCTGTACAAAGTTGTCGTAAAATGCTGATGCAGTATGAAGATCAACAGATGAACAGTTCTGTACCTATTCCGTGCTAA

Transcript

Bpl_scaf_12819-1.18

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46062	STEROL REGULATORY ELEMENT-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07197	SREBP1, SREBF1; sterol regulatory element-binding transcription factor 1	-	AMPK signaling pathway	ko04152	PMID: 28812709
			Insulin signaling pathway	ko04910	PMID: 28812709
			Non-alcoholic fatty liver disease (NAFLD)	ko04932	PMID: 28812709
			Insulin resistance	ko04931	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_12819-1.18 global RNA-seq network