Gene detail

Detailed information of Bpl_scaf_1271-4.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_1271-4.7	FAS-ASSOCIATED PROTEIN	Bpl_scaf_1271	387951	409924	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_1271-4.7

ATGATGAGTTCCGAAAGAAGGCGTCCAGAAAGCACAACAGAGATGGCTACAAATGTTGATAATGCAATTTTAGAGCAATTCTGTGCAATAACTGGAGCAACTACAGAAGTTGGCGTACGTCTATTAGAAGCATGTGATTGTAATCTAGATTTAGCCATTGGTATGCACATGGACAGTGATGGTGTCACTACACAGAATTGTGATGATGGTGGACCCACAGTATCTGAAACAGACGAAGGAAGTGAAGTTAGAGCACCAATACCACAGAAGAGTGAAACATTAGTGGAAGAGATGCCTGTCTACGGTTTCCGAGGAAGAAGACGAATAGCAAGATCAGTATTTGATGGTTTTAGAGATTTCCAAGCTGAAGCTAAACAACAAGAAGAAATGTTAGTTTCAGGAAGTGTCACAAACAAGAAAAGAACATTAGAAGATCTCTTCCGTCCTCCTATAGATCTTACATTTAAAGGAACATTTACTAATTTACGAGATGCAGGTATGGCACAGAAGAAATGGTTGTTGATCAATGTGCAGAATGTTCAAGAATTTGTATGCCAGGCTCTCAACAGGGATGTATGGAGCAACAGTGGTGCTAAAGCAGTAATCAAAGATCATTTTCTATTCTGGCAGGTATACCATGACAGTGAAGAAGGGAAGAAATTCTGTCAGTTTTATAAAGTAAATCAGTGGCCATTTGTTGCTGTGGTGGATCCTAGAACAGGTGAAAATATGTCAACGTGGCATAAATTGGATGCTATAATTTTTTGTGAATTAGTTACAGACTTTCTAAACGGACATCCCTACAATGAACCGTCAGAAGATTCCGGTCCTGCGACCAAAAGAGCTAGACGAGAACCAAGTATAGTAGATGCCACAGAAGACGAACAATTACAAGCAGCTATGCAAGCTTCTTTAAGCCACACTAAAGTGCCACCACCAGTTGTCATTGATTCTGAATCTGAGGACAGCAATGATATTGAAACATTTTCTGGTTCTGATGATGAAATCTGTCATTCTTCAGCTAAGTCATCACCAGCAAAATCATCTCCAGTTAAATCATCTCCAGTCAAGTCATCTACAATCAAAACTAATACTGAAAAACAAAATGACAGTAAAATAAATAATGATAGTGAAAAACAAAAACAAGTTGTTAACAATATAAATGATTCATTGAACAATATTTCTAGCTTAAGTGAAAGTGAAAGTAGCATGTTAGATAATACAGGAAGTTCAGATAATTTATGTTTAAGTGAAGAAAGAAATTATAAACAATATTTGGGACAAGAAACAGATCCTAAAACTTCCCTTATGATCAGATTTCCTGATGGTAATAGAAAACAATTATCTTTATCTTGTAAATCTAAATTGATGGCTCTAGTATTGTATGTTGCTGAAAATGGATTTAGCAATGAATGTTATGAACTTGTCACAAATTTTCCACGACGGCAGTTGTCTTATATGGACTTCATGTTAACTTTAGAGGATGTGGGACTTAATCCTCAGGAATCTGTCTTTGTACAGGCAAGGTGAAGGGTGTCATCAAGAATTAAATTTTGAAGGCAACCTGACACAAAGAGGAAGCTATTTATAAAGGATCTCAGACAAATGTAAAACCACTGTTATTTACATGAAAATGCCAGGATTCAACGTTAATACTTCCAAATAAAATATTATGTTGAAGAAGGAGCTAGACAGGATCGAGACATTAATAAAAAAAAAAGGCAAAGTAGACAGGATTTGATTGAGGCTGACACAGCAATGACAATGTGAGGTTTCTTCATCCATTAATGTCTGTCCTAGATGATACACATATGGTACCTCTTTAATATTAAGTCCTAACAAGGATCATAGGAAAGTTATTTCCTTCAAAATGATGTCTAGTTTTTAAAAACCAGTTGTAGTCACCAATGTAGGGTATTTTTTTTTTTTTACATCTACAGTCATTATGGGTAATTCTGCATACTGTCTAATTCTGTGCACTACTATGAATAACAGATATGCGCTGAATTGGACGGTACATAGAATTACCCTCCAGCATTATACATATGCTTTGATGGTCTATCACCATAATTACCACTCGAGTGTGTGTGTTGATACTAGTTATACATACAGTTGAGCATTGTTATAAACAAGGCAGATAGGTAATTTATTTGTGCATTACTCAGTCAAAATTTGGTCTAGACATAGGTAGGTGTCAGCTTAATTTACTGCAGATAACTTGAATACTGTGATATATTTAGGTAAAATCATGATCCTTTGTCTTCGACACAAGGGTCAACTGTATTTTATCAACGTTATTGATGTTTATTATATCAGTTTTATTTACGAAATCGAATGTAGACACCTGTTGCTTTAAGAGGTCGGGTTATGAGAATTAAACGTCACTTTCAACAGTAATATCAGTTAGCGTTTTGTATATGGTGGCAGTCAGTTTTAATACCGGGGAAAACCATTCTATTTTGAGAACACCAGAGACCTACTGCAAATCACTGACAAACTTTATACAAAGCTGTATTAAGCACATCTCTACACAGATGGGAATCAAAGTCATACCTTTAGCAGTGATTGGCATTGATTGCATAGGTAGATGTAAATCAAGTACCATACCATCATAACCACAAAAATCAGGCACCATACCATCGTACCCACGTAAATCAGGCACCATTCCATCATAACCACGTAAATCAGGCACCATACCATCGTACCCACATAAATCGTAACCACGTAATTCAAGTATCATACCATCATAACCATGTAAATCTGGCACCATACCATCAGAACCACGTAAATCAGGCACCATACCATCGTACCCACGTAAATCAGGCACCATTCCATCATAACCACGTAAATCAGGCACCATACCATCGTACCCACGTAAATCGTAATAACGTAATTCAAGTACCATACCATCATAACCATGTAAATCAGGCACCATACCATCATACCCACGTAAATCAGGCACCATACCATCGTACCCACGTAAATCGTAACCACGTAATTCAAGTATCATACCATCGTAACCAGGTAATTCAAGTACCAAAGCATTGTAACCACATAAATCAAGTACCATACCATCGTAACCACATAGATCAAGTACCATACCATCGTAACCACATAGAACAAGTACCATACCATCATAAC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD\|UBX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789	UBX	UBX domain	Domain	Interproscan
PF13899	Thioredoxin_7	Thioredoxin-like	Domain	Interproscan
PF14555	UBA_4	UBA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001012	Domain	UBX domain	Interproscan
IPR006577	Domain	UAS	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR050730	Family	UBX domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23322	FAS-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_1271-4.7 global RNA-seq network