Detailed information of Bpl_scaf_12374-9.22 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_12374-9.22SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND NBpl_scaf_12374925756933519-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
--

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR047575DomainSm domainInterproscan
IPR050914FamilySmall nuclear ribonucleoprotein-associated SmB/SmNInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10701SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND NInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0005687Cellular ComponentU4 snRNPInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11086SNRPB, SMB; small nuclear ribonucleoprotein B and B'-Spliceosome ko03040PMID: 28812709
Systemic lupus erythematosus ko05322PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_12374-9.22 global RNA-seq network
TOP