Gene detail

Detailed information of Bpl_scaf_12284-1.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_12284-1.7	UBIQUITIN LIGASE E3 ALPHA-RELATED	Bpl_scaf_12284	40668	92545	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_12284-1.7

GTGATCAACACCTTACAAAGAGCAGTTGACTGTACACAAGAACAAGCTGTAGAATATGCTACCATAGTTGATAGAGAGGGAAGAAGTTCAGTAAGAGATGGTACATTTTCCTATTGTGAAAAGGCTCGACATATAATTGAGCATGCTACATCCAGACATGGTAGTAAACCATTAAAGGTACAGATAATGCACACAATAGTGGTAGCTCATCAAAAGTTTGCTCTGAAACTGGTAACCTGGCTTCAAAATATTATTGGGAAATCAGATGGATTAAGAAGATTGTTTTGCACACTTAGCACACAGCCTTACGAGGATGGTGTATCATTGATTGAAAAGTTGATCTTATCTGATACACAGATGTGGAAAGCGGCCAGAATGGCAGTTCATCAGATGATGATGTCTGGTGTTTTAATGGACCAGGAATGTAAAAAACAGTTCTCGGTGATATTTACTAAGCATTATCCTCAACTGATTAGAGACTACGCTAATGATGATCATGATTTTGAAGTATCAGTAGCCTCATTGTCAGTTCAAATATATACAGTTTCCAGTCTGGCGAGGATGCTGGTTACAGATTATGATTTGTTAGATGTTATAATCTCAACGTTCCTCAAGTTTTGTGAGGAAAAGAAAAACAATGATGGCAAGCTTTCCTTTGAGAGAAATGAGAGAAGTACATCGTTTAAAAGAGCCTGTTATGTCTTATATGATGTTAAATATGCCTTGTTATGTAAACCATCACCAGAAGAATGGAATGACCAGCTTAGATGGAGCTTTCTCCGTGGGTTTACATCTTTTCTTAAAATGCTGAAAATGATGCAGGGTATGGATGCTGTTATCAGACAAGTTGGTGTACACTTAGAGTATGAACCAGAATGGGAAGGAGCATTTAACTTACAACTGAAACAAGATGATGTTATAACAGAGTTCTTAGAATGGTGTGGTACTGATAGATCAGTTCTAATTGAAGCTTTTAGATTGACATTGGATTTCTTGTTGAAATGTAAAGATAAGCCAGCTACAGTGAAGAGAGAAGATGAAACTGTTTGTGGACACAAGGCGAAGTGTTTGAAGTATAGTGTGGAAAAACAACCAGTATCTATTCATATACCTTTATCTAGGATTCTAGCAGGTTTATGTTTACATTTTGGAAAACATGGTCTTTTGTGGAACAGTCCTGAGCTTCATATTGAGAATCTTGATATGGCAGAAATTATAGAGCCTCCATTGAGAATACAAGTAATGGTAGCACAAACACAGGCTGGCATGTGGAGAAGGAATGGATATTCTTTGCTAAACCAGATATTTTTCTACCATAATGTGAAATGTAGAAAGGAGATGTATGACAAAGATATCTGCATGTTACAGATTGGTGCCAGTGTAATGGACAGCAATTCATTTTTGATACACCTTATGAACAAGTATAATAATCTTCTGTCTTGGGTGAAACCAGAGTATGACACACAATCAGGACAGGATGACCTTGTTAGACTGACAGTCACTTTAGCCGAAGAATTTCTTAATCTGCTTATTACTATTATAAGTGAACGTTATGTACTTGGTATAGGAAAGATACAGGAACAGGATATCATCAAAAGGGAGATAATTCACCAGCTCTGTATAGCACCAATGTCTCATAGTGAACTTGGCAAAGGATTACCAGAAAATAGTAATCATGAAACAGGAATTGAGGAAGTCATCAATGATGTTGCTGTTTTTAAGAAGCCAGGTACAACAATGGGAGGAAAGGGAATATTTGGTCTGAAAGAAGAATTCTACAAAGAATATAACCCATACTTCTATCACTATAGTAGATCTGAACAATCTAAGTCAGAAGAAGCTCAGATGAAGAGAAAGAAAGATTCCAAAGATGATCATGCTCTGCCACCACCAGTGCCACCAAGAGTAGAACCACTGTTCCAACCATTAGTTAGTTTGTTACAGTGTGATCTTATGGTGCACATTATGCATCTTGTACTACAAAGAACGGTTGCTGTGAGGTCAAGGTCATGGTCAGAAGCTCAAGTTGACAGGGTATTACACTTAGTAGGACTAGCACTACATGAACAAAGAAGAGCTATAATGGAGGGAAACCATAACTTTGATTTCTTATCCAGAGCTTTGAAAGATGACAGAAATATATTGACATTGTTAGAGTCTTTAGTTGCAGATCATCGTAACATTTCACATGATTCTACAAAAGATTTGTTAACATGGGTAGTCAAGCAATTTATGGAGATTCGACATATGACAAACTCTTCAATAAGCGCCAATACGTTAGACAAGTTATCAGCCAGTACTAGACAGGAGATAGAGTCTGCAAAGAAACAAAAAGCTCAAATTGCTGCAAAAAGAAGAGAAAAAATCATGGCAAAAATGTCCAAAATGCAGAAGAATTTTATACAAGATAATGCTGACTTGTTTGAAAGTACAGATGCTGAGTTATCTAAAACACCATCAGATATGGATGTTAGTGCACCTGACAACAGATTTCCTGTTGCCTTGGGTAGGAAGCAGACCTCTGTTGGATATGTTGGTGTTCAGCACGTTACATGTATCCTTTGCCAAGAAGAACAGGATGTTAGGCACAATTCCAGAGCTATGGTGTTAGCTGCTTATATTCAAAGATCTACAGTGCTATCTCAGAATCGCAGTAAAGTATTGTCAAATGCCGAAAAACATGATCCAACATTTATGTCCTCTGATCTCAACACTGGCGTACATACTAATTCTTGTGGTCATGTGATGCATGCCGACTGTTGGCAGAGGTTTTTTGATGCATTACTGGCTAAAGAGAGACGAGGCAGACCTTTTAGATTTAGACCTAGTTTAAGTTATAATGTAGACCACATGGAGTTCCTTTGTCCTCTGTGTGAATGTATAAGCAATACTGTGATACCTATTGTTCCTGCATTGTCTAGTCTTTCTAAAGACAGTGATCAAAAGAATATATATTTAAGTTTTAATGATTGGATCGATGGATTACAGAAAACTGTACAGAATAGTATAGAGAAAGCCAAAGAAGAAGATGATTTAGATGATTTTATGTTATTTAAACCATGTCCATTACCTACTGTGACAAAGATGTTGGCTGAGAGTGTCGCTAGAAATTTCCAATCACTGTGGGATTATGTCAGCGACGATACAAGTGATCAATTTTCTGATAGTATGAAAGATATGATAAAAAAGTTTGCCTCAGATGCTTACTCTTTTGGTTTGGGAGTTGAACCTGATGAATCTAATCCAAGAGTGCCAATTATGGCTTGGAGTACATGTGCCTTTACCATACAGTCAATAGAGCAAATATTGCGACAAGAACAGAAGCCTTTGTTTGGCTCTTTATCATCAAGACAGTCAGATTGTCTGTCGTCTGTTATCAAGTTTGCTGCTGTTTGTGGCCAAATTATGAATTCTGATCTGGTTAAACAACATTGTCTAAAAGTACTGTCGTTTTTGATCATGGATTCATCACAGACCAGTGAAAACATGTGTTTACTTGATCTCGACCTTTTCCATTACTTGACCTTGTTAACCATGACATTACCTTCACTCCATGTTGAAGGTCAAAGGTCACCATTGTCAATCATTCCTACAGGAGGAATAAACAATCACCATGCTTTAGAACTTGTATTTACAGCTCATCTGGTACAGATCATGCTAGTCTGTGATATATCTTCTCATAGTGCAATGGAAATTGAAGTAGATGCTGAAGCTGATAAACTGTTGAAAACATACACGAATGTCAGACAGTTAGCTGGCTATTAA

Transcript

Bpl_scaf_12284-1.7

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|N-domain
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02617	ClpS	ATP-dependent Clp protease adaptor protein ClpS	Family	Interproscan
PF18995	PRT6_C	Proteolysis_6 C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003769	Domain	Adaptor protein ClpS, core	Interproscan
IPR014719	Homologous_superfamily	Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR039164	Family	E3 ubiquitin-protein ligase UBR1-like	Interproscan
IPR042065	Homologous_superfamily	E3 ubiquitin-protein ligase ELL-like	Interproscan
IPR044046	Domain	E3 ubiquitin-protein ligase UBR-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21497	UBIQUITIN LIGASE E3 ALPHA-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0030163	Biological Process	protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071596	Biological Process	ubiquitin-dependent protein catabolic process via the N-end rule pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10626	UBR2; E3 ubiquitin-protein ligase UBR2	EC:2.3.2.27	Ubiquitin system	ko04121	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_12284-1.7 global RNA-seq network