| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_11793-4.6 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN | Bpl_scaf_11793 | 397116 | 447734 | + |
| CDS | |||||
| Bpl_scaf_11793-4.6 | |||||
| Transcript |
| Bpl_scaf_11793-4.6 |
| Protein |
| Bpl_scaf_11793-4.6 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00307 | CH | Calponin homology (CH) domain | Domain | Interproscan |
| PF00435 | Spectrin | Spectrin repeat | Domain | Interproscan |
| PF08726 | EFhand_Ca_insen | Ca2+ insensitive EF hand | Domain | Interproscan |
| PF13499 | EF-hand_7 | EF-hand domain pair | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001589 | Conserved_site | Actinin-type actin-binding domain, conserved site | Interproscan |
| IPR001715 | Domain | Calponin homology domain | Interproscan |
| IPR002017 | Repeat | Spectrin repeat | Interproscan |
| IPR002048 | Domain | EF-hand domain | Interproscan |
| IPR011992 | Homologous_superfamily | EF-hand domain pair | Interproscan |
| IPR014837 | Domain | EF-hand, Ca insensitive | Interproscan |
| IPR018159 | Repeat | Spectrin/alpha-actinin | Interproscan |
| IPR018247 | Binding_site | EF-Hand 1, calcium-binding site | Interproscan |
| IPR036872 | Homologous_superfamily | CH domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11915 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005886 | Cellular Component | plasma membrane | Interproscan |
| GO:0030018 | Cellular Component | Z disc | Interproscan |
| GO:0030036 | Biological Process | actin cytoskeleton organization | Interproscan |
| GO:0030054 | Cellular Component | cell junction | Interproscan |
| GO:0030864 | Cellular Component | cortical actin cytoskeleton | Interproscan |
| GO:0042995 | Cellular Component | cell projection | Interproscan |
| GO:0051015 | Molecular Function | actin filament binding | Interproscan |
| GO:0055001 | Biological Process | muscle cell development | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K05699 | ACTN1_4; actinin alpha 1/4 | - | Focal adhesion | ko04510 | PMID: 28812709 |
| Adherens junction | ko04520 | PMID: 28812709 | |||
| Tight junction | ko04530 | PMID: 28812709 | |||
| Regulation of actin cytoskeleton | ko04810 | PMID: 28812709 | |||
| Leukocyte transendothelial migration | ko04670 | PMID: 28812709 | |||
| Viral carcinogenesis | ko05203 | PMID: 28812709 | |||
| Systemic lupus erythematosus | ko05322 | PMID: 28812709 | |||
| Amoebiasis | ko05146 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_11793-4.6 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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