Gene detail

Detailed information of Bpl_scaf_11095-0.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_11095-0.10	RIBULOSE-5-PHOSPHATE-3-EPIMERASE	Bpl_scaf_11095	42169	51062	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_11095-0.10

ATGATCGACAATGGCGCAGATTATCTTCATCTCGACGTCATGGACGGACATTTCGTTCCAAACTTATCGTTCGGTCACCCAGTTGTCAAATGTCTACGTCCCAAATTACCGAATTGGATAGAAGACATGGCTGCCAGTGGTGCAAATATGTACACATTTCATTATGAGGCTACCGATGATGTTCCTGGATGTGTCAGAAAGATCAAAGAGGCTGGTATGAAGGCAGGAATAAGTTTGAAACCAGGAACAAAAGTAGAAGTATTAGATCCTTTTGTTGATTTAGTGGATACTGTACTTATTATGACTGTAGAACCTGGATTTGGAGGTCAAAAGTTCATGGCAGACATGATGCCAAAGATTGCTTATTTAAGAGAGAGATGGAATGATTTAGATATAGGAGTTGATGGTGGAGTTAGTTCTTCTACAATTCAACAATGTGCAGAGGCTGGAGCCAACATGATTGTGTCAGGAAGTGCATTAATGAAGAGTGACAATCCAGGGGAAGTAATTCAATTCATGAGAAACATGGTGGACGATTCAATTCAAAAGTCTCAACTAGAAAGATGATATGATGATAGCAAAACTATATCTGTACAGTGAAACCTGTCTAAACTGAACCCTGAGTAAACCGAGAAACCTGCCTAAAGCAGACAGACTTGACAGTCCCATCTACTAATATCTATGATGAACCTGTGTAAACCAAACACCTGCCTAAATTGAACAAATTATTCAGTCCCAAAGAGGTTCAGTTTAGATTGGTTTTACTGTATATTTGTTTAGAAATCATTTCTAGGGTATCGTAAAAAGTGGTTTTACTGATTTATTTTGGTGCATTGTATGTGATATAATGTGCCATAAGACTATAATACTGGTTTGTTTTATTGATCTTATAAAAATATTACTACAGCTGTCGTAACCCTCCCTGTAGTTTAACTAATTGGGAGTTTGTTAACACCAATTAATAATATATTTTTAATCCATGCTTTACACTAATTAGTGACTTGCGGCAGGTCAGTTATTTTCTCTGAGTACTCCGGTTTCCTCCCCCAATAAAACTGACCGCCACGATATAGCTGAAATATTGTTGAAAGTGGCGTTAAACACCATAACCCTAACACTACAATATTACTGCAGTTGTCGTAACCCTCCTTGTAGTTTAATTAATTTGGAGTTGACGAAGTTTGTTAGCACCATTTAACTAAATAAATGTATTTTTAATCCATATATTTAACACTAACAAGTGAAAAATGGGACCTTCGTGATCGTGATTGTATGGCAGTTGGATTTACAACTACCCGTGCAATCAGTACCTATCACCACTAAAGTTGTGAGTTTGAATCATGCTCATGGCGAGGTGTACTCGATACAACTTTATGTTTGTTAGTGACTTACGACAGGTCAATGATTTTCTCCGGGTACTCCGGTTTCCTCCACCAGTAAAACTGACCGTTATGATATAACTGACATATTGTTGAATGTGGCATTAAACACCATAACCCCTATCCTTAACCCTTTTACAATTATTGGTAATGTCTGCACGCTTTAAAATCATCACCTATTCTCCTTCCCAAAGACAAATGAAGAACAACTGTGTCATATTGAAAATTTGCTTGGGTCAATCAGTTTTGCTTAACAATGCGTAGCAGTGTCAGGAAAGCTGATATTTTTTGTCAAACATTCGATGGCTTTGGCTCGTAAATGTCATTGTAAATCATGTGACAATATTAAAAGGTAGAAAATGTCTTGATTTTCTATCATATTGTATTAATTGATATGTTGGATTTCAAGAATTCAATGTGGCCACTCATTCACAGTAAAACCCATTATTACGACATGTCAACTGTGAATTTCATGCAAACATTAACCAATTAAAAATCATGTTAAATATTAATTGCATTAACCAATTAGAAATTATGTTATATGATAATTGCTTTAAAATTAAACAATTAAAATAATTTCAGAGATAATGCATATTTCTGATGGATATATTACTACTTGTACCTACAACTGGCCAGCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00834	Ribul_P_3_epim	Ribulose-phosphate 3 epimerase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000056	Family	Ribulose-phosphate 3-epimerase-like	Interproscan
IPR011060	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11749	RIBULOSE-5-PHOSPHATE-3-EPIMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004750	Molecular Function	D-ribulose-phosphate 3-epimerase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0009052	Biological Process	pentose-phosphate shunt, non-oxidative branch	Interproscan
GO:0016857	Molecular Function	racemase and epimerase activity, acting on carbohydrates and derivatives	Interproscan
GO:0044262	Biological Process	obsolete cellular carbohydrate metabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01783	rpe, RPE; ribulose-phosphate 3-epimerase	EC:5.1.3.1	Carbon metabolism	ko01200	PMID: 28812709
			Biosynthesis of amino acids	ko01230	PMID: 28812709
			Pentose phosphate pathway	ko00030	PMID: 28812709
			Pentose and glucuronate interconversions	ko00040	PMID: 28812709
			Carbon fixation in photosynthetic organisms	ko00710	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_11095-0.10 global RNA-seq network