Gene detail

Detailed information of Bpl_scaf_1077-0.14 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_1077-0.14	LIPOXYGENASE	Bpl_scaf_1077	41070	63451	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_1077-0.14

ATGGCTGCACATACATATAAGAACGTTATTTTATTTTTCCAAATATTTATTTACAGTTTGTCGACTTACAAAATATCCGTGAAAACTGGAGATAAAACAGGCGATGGGATAGATGCAAATGTCTCCATCAGATTGCACGGACAAGAAACAAGAACGGATACCTATGATATCGACAATTTCTTCAAGAACTCGACTGGAAACATTGACGTTTACTCGGTCACCTCAGAATTCGACATACCGAAAGTACAGAGAATAGAATTATGGAGAGATAACTGGAATTGGTTGAGCAATTGGTATTTGGAATGGATCGAAGTTACAAATCCATCTTCAGAAATAACGACAAAATTTTCCGTTATGAAATGGATCAAAACAGGCCAACATTATTTCCTCAACCACATTGATACCTGTTTACCACAAGATGAACAATTCAAAGAACAAAGGAAGATGGAACTTATTAACATGCAAAATCAGTATCAGTTAGAGGTGAAGATTTCAGGATTATCCGCCCAGGTTAAAGAACTACCAGACGAAGAAAAGTTTTCTGTTATTGATAGTGATGCTCTTTTATTGAAGAGAAAGGAATATAACCAAGCAGCCGTGGAGCTTGTAAAGACATATGGAAGGAAATGGACCAGTGTTGACGACATCAAAGGCGTGTATACAAAAGTATTTGGCACACCCCAGGGTGCAGAGTATTTTAACGATGATGCAAGCTTTGGAAGACAACGAATATCAAGTCTAAATTCTGCACTTATAAATCTATGTGAAGCTATTCCCCCAAACTTAGCGGTGGATGATGAAATGCTGAAGCCTCTACTAGAGGGAAAAACAATCAAACAGACCATTGACGGGAAAAGATTATTTATCGTTGATCTGGCTATATTGGAAGGACTACCAGCAAAGACTTCTGAATTGGTGATTCCTTGTCCAATTGCTTTGTTCTATTTCAACAATGAAGGGAATTTGATGCCTATCGCCATACAATTATTCCAACAAAAGGGCCAGGATAACCCGGTATTTTTACCAGATGATCCAAAATACACCTGGATGTTGGCCAAGTTATGGTACAATCTAGCTGATGCTACCTATCATCAAGCGCTCACACATCTCAATTTCACCCATTTTATGATGGAAGGGATATGCGTATCATCGAAAAGACAACTGTCACAGAGTCATCCGGTTAACAAATTACTCACTCCACATTTTATGTACCTGATGGCTATTAATAGTCTAGGCCATATGATACTAGTTAATCCTGGTGGTTACTTTGACAAAACGTTCAATGGGGGAAATAAAGCTGCCTTCTTGCTGATGAAAAAAAGCTTAGTTGACTGGAAATTGGATGTAAATGGAACACTACCAGAGGAACTGAGAAGACGTGGGGTACTAGATTCATTAGTGCTGCCAGAAAAGTTCCATTTCAGAGATGACGCACTGTTGTTGTATCATGCTATTAAAACCTACGTGACAAAATACATTTCACTTTATTACTCTGCAGAGGGATCTCTGAAGGCCGATTATGAAATACAACAGTGGGGTGCTGAATTGGTAAAATCACGTGATGAAGGAGGAGTAGGAATTCTGGGTGTTCCAAATAATGGCGTTTTTGAAGTTATTGATCAACTTGTAGTGACCTTGACCGCCATCATCTATGCATGCAGTGTCGGACATGCAGCTGCAAACTTCCAGCAGTATGATGAGTATGGAGCACCATTGAATTATCCATCTATTATGAAGGGCACACCACCGAAAGACAAGAGGCCTGTGACTATTGAAACTATTCTAGAGTCGATAGCTGATAGAAAACAGTTACTAAAACAAATGTCATTTTCAAAACTTCTGAGTGAGAAGGGAACAAAGAGACTTGGTGATTTTGAGAGGAACTTCATTGTTGATGCAAAAGCAGTGGAAATCGTACAAGAGTTCAGAGAAGAGCTAACGAAGATTGGCTTAACAATTGATGAGCGTAACAATAAAAGGGAATTTCCGTACCCATGGCTTCATCCTGATGAAATACCAAATTCTATTAGTATTTAA

Transcript

Bpl_scaf_1077-0.14

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00305	Lipoxygenase	Lipoxygenase	Domain	Interproscan
PF01477	PLAT	PLAT/LH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000907	Family	Lipoxygenase	Interproscan
IPR001024	Domain	PLAT/LH2 domain	Interproscan
IPR013819	Domain	Lipoxygenase, C-terminal	Interproscan
IPR020834	Conserved_site	Lipoxygenase, conserved site	Interproscan
IPR036226	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan
IPR036392	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11771	LIPOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0034440	Biological Process	lipid oxidation	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00461	ALOX5; arachidonate 5-lipoxygenase	EC:1.13.11.34	Arachidonic acid metabolism	ko00590	PMID: 28812709
			Fc epsilon RI signaling pathway	ko04664	PMID: 28812709
			Ovarian Steroidogenesis	ko04913	PMID: 28812709
			Serotonergic synapse	ko04726	PMID: 28812709
			Toxoplasmosis	ko05145	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_1077-0.14 global RNA-seq network