Gene detail

Detailed information of Bpl_scaf_10673-0.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_10673-0.11	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Bpl_scaf_10673	76044	108190	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_10673-0.11

ATGACATTGCCTACTAGAAGGGCCCTGTGTGCTGTGATGATGCTGGCCGTCATTGAGCATAAAGGGACCATCGTTATGAAGGACAAAGAAGAGCTGGACTCCTGGTCTGTTATACTTAATGGACAAGTGGAAATTCTTAAAGAGGACGGATCTGCTGAATTCCTGTACATGGGAGACAGTTTTGGTATAACAACTCCTACCCTAGATAAGATGTACCATGAAGGTGTGATGAGGACAATTGTTGATGATTGTCAGTTCCTTAGTATTGCTCAACAAGATTACCATGAAATTATGAACCAGGGCAAAGAGAACACAAAGCGACATGTTGAAGATGGTGAAGTCGTTATGGTAACAGAACACAGGGTTTTTGATGGTGGTAACAGACGAGGACAAATCATTATTAGGGCATCACCAGATCATTTAATGGACCATCTAGTACAAGAACATTCAGCAGTAGACCCTACATTTGTTGAGGACTTTTTACTATGCTACAGAATCTTTCTAAAAAGTCCAATGGAATTAGCTTACAGGTTACAAACATGGTTCAACACATCTACGTTAAGAAATAAAGTCACAAGGGTTGTATTACTATGGGTCAACAACCATTTTATAGATTTTGAAACAGACTCGACCATGAGTGAATTTCTGGAGCATTTTGAAGGAATGCTTGAAACTCAGGGAATGACAGGACAACTCAGGTTATTGAACATTGCATGTGGTGCTAAAGCCAGAAACAGGAGTGTAACTTTAACTCGTGCTACACGTGAAGAGGTGCTACATTTCTCTGTATTAGGAGGGTTAGAGAGAGGATGTGGTATATTCATTTCTAAAGTAGAAAAAGGATCCAAAGCTTATGAGGCTGGCCTCAAAAGAGGAGATCAGATTTTAGAAGTGAATGGCCAGAATTTTCAGAATATTAGCCATAATCGTGCATTAGAATTGTTACGAGGGACCACACATTTGTCAATGTCTATCAAATCTAACTTGCCTGAATTTAAAGAAATGATAGAAGTGACAGAACAAAATAAACAAAATAAACAAACAACACAAAGTGTTTCAACTTTTTCTAAACGATTATCTGCCCCTGATTTAGACAATTTGTCTCCGTTATTTAAATCTAAAGACAGAAAAATGGACAAAAAGGATAAATCATGGTTTAGTACTGTGGGAAAAAAGGCCTTCATTAAAAAAATGGGAAGTTTTTTTCCAAGGAATTCTAGTACTTCTAACATAGAATTTGAGAACATGAACAAGTCAGATGAGAGTTTATACTCTGGTGTAAATCATGGCGTGTCTAAGACATCTTCATCATCATTAACAGTTCAGATGCCTAATCACCTGAGTGCCAGTAATCCTGATCTGTCTCTTCTGATGGTAGAAGATCCTAAACAAGAATTCCCTGATCATGTTGTTAAAGTCTTTAGGGCAGATCAATCTTTTAAATATTTACCAATTCACAAGGAAACTACAGCAAGAGAAGTTGTGATGTTATCATTACAAGAATTTAATATTACAGATCCTAGCAGTAATTTTTCATTATGTGAAGTCACAGTGGAGAATGAGAGTCTCATAAAACAGAAACGTTTACCTGACCAAATGACAAATTTACCTGACCGACAGAATCTCAATGGAAGGCGTACTGTTCCCTGTGTACTCAGGTATTATTTAAAGAACAATCTGAACACGGAGACACTGGTTCCTGATGAACTGAGATCTGAACTGATCAGAGAGGCCCACATCAGTCTTCTGCAGCTGAACACGACAGAAGTGGCATCACAGTTGACGTTAGAAGATTTCAAAGTGTTCAAAGACATAGAGCCAACAGAGTATATTGATGACCTATTTAAAATCAACGAAAAGTATGGTAGACCAAGCTTACTTAAGTTCTCTGAGTTGGTGAACAAGGAGATGTTCTGGGTGGTATCAGAAGTTTGTAGTGAACAGAATCTAGTCAAGAGGATGAAACTCATCAAACATTTCATTAAAATAGCTCGTCATTGTAAAGACTGTAAAAACTTTAATACAATGTTTGCCATCATCAGTGGATTAAATCACTGTTGTGTTGACAGACTACGCAATACTTGGGAAAAAGTACCAAATAAATATGCCAAAATATACAACGATTTGAAAGAACTGATGAATCCTTCCAGAAATATGGCTAAATATAGAAATTTAGTCAACAGTGAGAATGTACAACCACCAATGCTGCCTTTTTTTCCAATTGCAAAGAAAGATCTGACGTTTATACATTTAGGAAATGATTCATATGTAGATGGTTTAGTCAATTTTGAAAAGTTCCGTTTAATAGCGAGAGAAACACGACATATATGTAACATGGCGTCGGCTAAATATGATGTTAGTACAATGTTTCTTGGTACACCCAGTATGTATGAGAGTAACTGGATCTCAGGTATAGCTACTATGAAAAGAATGAAAGCACGACGAGGCTCCACGTTACCCAACGCCAAAAAAATGTATGAGGAAAATGAAATGAAACGACGAGTGAAGTCATACCTATGTAATCTAAAAGTTATAGATAACGAGGAAAAATTAATGGAAATGTCTCATCAGTGTGAACCTCCTGGTAAGGAC

Transcript

Bpl_scaf_10673-0.11

ATTGATTATCCTGATGTACAGGTTATGAAAAGTGGTCAACGTCAGCAATGTAATAATAACATTGACCGTGTGATAGACTACGACCATCACGAAGGCACGAGACCCATTCGTAGGATGAATTCTGACAGTGTTGTTGAACAGTTATCAGCTGATTATGGATTACGTGACCCGTATTTACGAAATGAACAATACATGAAAAGATGTTCCCGAGCTAGTGATACATCTAGTGCTTATTCCGGTTCTGACATGATGCAGTCGTCGATAGATGACCAAGAAAATGTGGATATGGACATTAGTGGATTACCAGAGAGTATGGTGGATTCTGATGATGAGGAAGGGTATGCTGAATCCACTGGGGTAGAGAGATACTTCTAGATTTTATACAACATTTTACAGTAAGATATTACACATGATATAGAGATACTTCTAGATTTTATACAACATTTTAGAGCTTTTGCTAACATGACATTGCCTACTAGAAGGGCCCTGTGTGCTGTGATGATGCTGGCCGTCATTGAGCATAAAGGGACCATCGTTATGAAGGACAAAGAAGAGCTGGACTCCTGGTCTGTTATACTTAATGGACAAGTGGAAATTCTTAAAGAGGACGGATCTGCTGAATTCCTGTACATGGGAGACAGTTTTGGTATAACAACTCCTACCCTAGATAAGATGTACCATGAAGGTGTGATGAGGACAATTGTTGATGATTGTCAGTTCCTTAGTATTGCTCAACAAGATTACCATGAAATTATGAACCAGGGCAAAGAGAACACAAAGCGACATGTTGAAGATGGTGAAGTCGTTATGGTAACAGAACACAGGGTTTTTGATGGTGGTAACAGACGAGGACAAATCATTATTAGGGCATCACCAGATCATTTAATGGACCATCTAGTACAAGAACATTCAGCAGTAGACCCTACATTTGTTGAGGACTTTTTACTATGCTACAGAATCTTTCTAAAAAGTCCAATGGAATTAGCTTACAGGTTACAAACATGGTTCAACACATCTACGTTAAGAAATAAAGTCACAAGGGTTGTATTACTATGGGTCAACAACCATTTTATAGATTTTGAAACAGACTCGACCATGAGTGAATTTCTGGAGCATTTTGAAGGAATGCTTGAAACTCAGGGAATGACAGGACAACTCAGGTTATTGAACATTGCATGTGGTGCTAAAGCCAGAAACAGGAGTGTAACTTTAACTCGTGCTACACGTGAAGAGGTGCTACATTTCTCTGTATTAGGAGGGTTAGAGAGAGGATGTGGTATATTCATTTCTAAAGTAGAAAAAGGATCCAAAGCTTATGAGGCTGGCCTCAAAAGAGGAGATCAGATTTTAGAAGTGAATGGCCAGAATTTTCAGAATATTAGCCATAATCGTGCATTAGAATTGTTACGAGGGACCACACATTTGTCAATGTCTATCAAATCTAACTTGCCTGAATTTAAAGAAATGATAGAAGTGACAGAACAAAATAAACAAAATAAACAAACAACACAAAGTGTTTCAACTTTTTCTAAACGATTATCTGCCCCTGATTTAGACAATTTGTCTCCGTTATTTAAATCTAAAGACAGAAAAATGGACAAAAAGGATAAATCATGGTTTAGTACTGTGGGAAAAAAGGCCTTCATTAAAAAAATGGGAAGTTTTTTTCCAAGGAATTCTAGTACTTCTAACATAGAATTTGAGAACATGAACAAGTCAGATGAGAGTTTATACTCTGGTGTAAATCATGGCGTGTCTAAGACATCTTCATCATCATTAACAGTTCAGATGCCTAATCACCTGAGTGCCAGTAATCCTGATCTGTCTCTTCTGATGGTAGAAGATCCTAAACAAGAATTCCCTGATCATGTTGTTAAAGTCTTTAGGGCAGATCAATCTTTTAAATATTTACCAATTCACAAGGAAACTACAGCAAGAGAAGTTGTGATGTTATCATTACAAGAATTTAATATTACAGATCCTAGCAGTAATTTTTCATTATGTGAAGTCACAGTGGAGAATGAGAGTCTCATAAAACAGAAACGTTTACCTGACCAAATGACAAATTTACCTGACCGACAGAATCTCAATGGAAGGCGTACTGTTCCCTGTGTACTCAGGTATTATTTAAAGAACAATCTGAACACGGAGACACTGGTTCCTGATGAACTGAGATCTGAACTGATCAGAGAGGCCCACATCAGTCTTCTGCAGCTGAACACGACAGAAGTGGCATCACAGTTGACGTTAGAAGATTTCAAAGTGTTCAAAGACATAGAGCCAACAGAGTATATTGATGACCTATTTAAAATCAACGAAAAGTATGGTAGACCAAGCTTACTTAAGTTCTCTGAGTTGGTGAACAAGGAGATGTTCTGGGTGGTATCAGAAGTTTGTAGTGAACAGAATCTAGTCAAGAGGATGAAACTCATCAAACATTTCATTAAAATAGCTCGTCATTGTAAAGACTGTAAAAACTTTAATACAATGTTTGCCATCATCAGTGGATTAAATCACTGTTGTGTTGACAGACTACGCAATACTTGGGAAAAAGTACCAAATAAATATGCCAAAATATACAACGATTTGAAAGAACTGATGAATCCTTCCAGAAATATGGCTAAATATAGAAATTTAGTCAACAGTGAGAATGTACAACCACCAATGCTGCCTTTTTTTCCAATTGCAAAGAAAGATCTGACGTTTATACATTTAGGAAATGATTCATATGTAGATGGTTTAGTCAATTTTGAAAAGTTCCGTTTAATAGCGAGAGAAACACGACATATATGTAACATGGCGTCGGCTAAATATGATGTTAGTACAATGTTTCTTGGTACACCCAGTATGTATGAGAGTAACTGGATCTCAGGTATAGCTACTATGAAAAGAATGAAAGCACGACGAGGCTCCACGTTACCCAACGCCAAAAAAATGTATGAGGAAAATGAAATGAAACGACGAGTGAAGTCATACCTATGTAATCTAAAAGTTATAGATAACGAGGAAAAATTAATGGAAATGTCTCATCAGTGTGAACCTCCTGGTAAGGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF00617	RasGEF	RasGEF domain	Family	Interproscan
PF00618	RasGEF_N	RasGEF N-terminal motif	Domain	Interproscan
PF00788	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000159	Domain	Ras-associating domain	Interproscan
IPR000595	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR000651	Domain	Ras-like guanine nucleotide exchange factor, N-terminal	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR008937	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR018490	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08018	RAPGEF2, PDZGEF1; Rap guanine nucleotide exchange factor 2	-	Rap1 signaling pathway	ko04015	PMID: 28812709
			MAPK signaling pathway	ko04010	PMID: 28812709
			Tight junction	ko04530	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_10673-0.11 global RNA-seq network