Gene detail

Detailed information of Bpl_scaf_10588-4.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_10588-4.10	60S RIBOSOMAL PROTEIN L4	Bpl_scaf_10588	422158	449275	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_10588-4.10

ATGAGAACACCATACGGAATTGAACAAGCAGCTAACCGATTCATTACAGGTCTCAACAGAGCAACTGAAAAATGCCCAGTTCATAGAAAATCAAAATTCAGACGTAAGAAAAAGATAAGCTGGTCACCAAAATTAGCTAAAACTGTCACTGATTTAAACAAAAAAAGAGCCTTCTATAAAAGTGGGTTCACCACTTTAAAAAAAAACAACATCTACAATATAAAACGTAATGATGCTAGAAGGGCTGCAAGATCAGCTGCTGCCGCAAGACCACTTATTTCCGTTTACAGTGACAAAGGGGATGTGTCCGGATCAAATGTCACACTCCCTGCCGTATTCAGGGCACCAATCAGACCAGACATTGTCAACTTCGTCCATGCCCAAATGAGGTTCAACTCCAGACAACCATATGCTGTCAGTGAGAAAGCAGGTCATCAGACTTCAGCAGAATCATGGGGTACTGGTAGAGCTGTGGCACGTATCCCTAGGGTCAGAGGAGGTGGTACCCACAGATCTGGTCAGGGAGCCTTCGGTAACATGTGTCGTGGAGGTCGCATGTTTGCCCCAACAAAAACATGGAGAAGATGGCACAGAAGAATAAATGTCAACCAGAAGAGATACGCCATCTGCTCAGCCATTGCTGCTACAGGCATCCCTGCTCTTGTTATGTCAAAAGGACACAAAATTGAAGAAATCGCTGAGGTCCCATTGGTTGTCAGTGACAAAATTGAAGAATTCAAGAAGACAAAGGAGGCTGTTATACTATTGAAAAAAGTAAAAGCCTGGAATGATATTCAAAAGGTCATCAGTTCCAAAAGATTCAGAGCTGGCAAAGGTAAAATGAGAAACAGAAGAAGAATAATGAGAAGAGGACCTTTAATAATTTATAATAAAGACAATGGCATTACCAGAGCTTTTAGAAATATACCTGGAATAACATTAATAAATGTTGCAGCATTAAATCTTTTAAAAATTGCCCCTGGTGGCCATGTTGGTAGATTTTGTATTTGGACAGAATCAGCTTTTTCACAATTAGATAAATTATATGGTACATGGAGAAAGGCATCAAAAGAAAAAGCAGATTACAATTTACCAATGCATAAAATGACAACAACAGATTTATCAAGATTATTGAAAAGTGATGAAATACAAGCAGCAATAAGAGAACCAAAACGTGATAATAAGAGAAGAATATTGAAAAAGAATCCTTTGAAAAATCAACGAGTTATGAATCGTCTGAACCCATATTATAAAGTTACTAAAAAAGCTGCTCTAGAGATTGAAGCCAGAAGGAAGAAAGCTAAAGCAGGAATTGTTGATGAAAAGAGAGGTATTAAGGCTGCACCAAAGGCCAAGAAACCAGCTAAACGTGCTGTTAAAGGAAAGGCAAAAAAATAGACTTGTGCCAATATATGGACATAGGCTGATACTAATAAAATAAAATGCCAGCCTCCGATCACAAAACAATATTTTTTTTATTATTTTAATCATTAATATTTATGCTTTAGTCAGCGTATATAATAAGGGCAATGCTGCAATACTTATATTATTTACAGCATGAACTTCCACAAATTTTGTTCTTTACATAGAGATTAAAGTGACAGTCGACGATTTTTCATAATTTTTAAGTTTGACAACAACTTGAAAATAAGATAGATAAATCAATAAAATGACCAAATAACCATCCCAGATAAACAGAAATTTGTTTAATTTAGTTGTAATTAAACAAATTACTTCCGATCGTCTGCTGGCCAAGCTCGTTAATTATTCATGACACAGTATGACAACAGTTAATACACAAAATGCATTGACCCAGATTTATCAAAACAAAGACATGGATTATCTATCTTTAGACTAAAATGTATAATTCATGCATGTTTAATGATAAATTACATATATTTACCTCTTAAGAACACAATTTATCAATCAAAACTCAAAATATTTGCCATTTTCGGATTAGATTTTCCAACAGAAGACATTTTAATCCACAAACCTTTTCCGTGTGTGCTCAGTTCATCATACAGAGGCGAAGATATCTTGATTGACTTGAATTAGAGTAGCCCACACACAAATTGCTTGCGAACACGTTTTCCCCGAAATATTTCGTGAAAACCACTTTTCAGGGTTTTTGGCTGTTTTAGATGAATTTTTACTCACATCTGTTCAAGTTTGGGTGAAAAATTCCAATTTAAAAAATCTTGACAAAATCGTAGACACTGTCACTTTAACAGTTGAAATGGAGTAGTAAATGTTTAACAAAATAACAAACCACTACACAAATCATTGTGAAAACTTAAAGCATTTAATGGACAACTAAGAAAGGTTTGAAGATAACAAAGGGGGTAAATCACAGAACAGACAATACCATGGCCAAACAAAACAGAACAATGATATAACAAAAACACTACACAGAAAACGAAAGAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00573	Ribosomal_L4	Ribosomal protein L4/L1 family	Family	Interproscan
PF14374	Ribos_L4_asso_C	60S ribosomal protein L4 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002136	Family	Large ribosomal subunit protein uL4	Interproscan
IPR013000	Conserved_site	Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved site	Interproscan
IPR023574	Homologous_superfamily	Large ribosomal subunit protein uL4 domain superfamily	Interproscan
IPR025755	Domain	Large ribosomal subunit protein uL4, C-terminal domain	Interproscan
IPR045240	Family	Large ribosomal subunit protein uL4, eukaryotic and archaeal type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19431	60S RIBOSOMAL PROTEIN L4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0022625	Cellular Component	cytosolic large ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02930	RP-L4e, RPL4; large subunit ribosomal protein L4e	-	Ribosome	ko03010	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_10588-4.10 global RNA-seq network