Gene detail

Detailed information of Bpl_scaf_10588-3.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_10588-3.11	UBIQUILIN	Bpl_scaf_10588	323075	347670	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_10588-3.11

GACTCGGAAGACTGACAGGTCAAAATACAGAAATCATGGCGGAGGAAGAAACATGCAAAATGATGAAAATAACAGTAAAAACACCAAAAGAAAAGCAAGATATTGAAATCGATACAAATTCCCATGTTAAAGAGTTAAGAGAAATGGTATCCCAGAAATTTAATGCTCCTGTGGAACAACTATGTTTGATATTTGCTGGGAAAATTTTGAAAGATGAAGATTCTTTGGAACAACATGGGATAAAAGATGGTTTGACAGTTCATTTAGTGATCAAGTCAACAAATAGATCTCAAGAACAAGCTGCCCAAAGAGCCTCCAGCAATCCAAGTCCAGCAGGAAGCACACCAATTTCTACAGGGACCCAGCCCCCACAACCAGATATAGGACAAACACCATTTGGTCTGGGTGGACTTGGTGGTTTAGCTGGACTTGGTAACATGGGAATGGGATCTGCTAACTTTATGGAAATGCAACAAAGAATGCAAAGAGAGATGATGAGTAACCCTGAAATGTTAAGACAGATGATGGATAATCCCATGGTACAGTCACTGATGTCTAACCCTGATGTGATGAGACAAATGATAACAAGTAACCCACAGATGAGAGAATTAATGGAGAGAAATCCAGAAATAACACACATGTTGAACAACCCAGAGTTGATGAGACAGACAATGGAATTGGCTAGAAATCCAGCTATGATGCAGGAATTAATGAGATCACAAGACAGAGCTATGAGTAATTTAGAGAGTTTACCCGGTGGTTTTAATGCACTACAGAGAATGTACAGAGATATACAAGAACCAATGTTAAATGCTGCACAGGAAGGCATGGGACAAAATCCATTTTCAGCCTTGATGGGTTCAGGATCAGGTACAGATAATGGACAACAAGGAAGAGAGAATACAGATCCCCTACCAAACCCCTGGGATCCAAATTCAACACAGTCACCCTCATCACCGTCATCTACAACTACCCCCTCTGGAACAGGAACAACACCACAACAACCTACAGGTATGTTTGATAGTCCTGGAATGCAGAGTTTAATGTCACAGATCACACAAAACCCACAGTTAATGGATAATATGTTACAGGCTCCATACATGCAGGCCATGTTACAGTCTTTATCTGCCAATCCAGACATGGCACAAAATATTTTAGCAGCCAATCCAATGTTTGCTGGAAACCCACAATTACAGGAACAGATGAGAACACAATTACCTAATATGTTATCACAGTTACAAAATCCAAATGTACAACAATTTTTGACCAACCCTAGAGCATTACAAGCTATGATGAGAATACAACAAGGAGTTCAAGAATTAGAACAAGAAGCTCCAGGCTTGTTTCCAGGGATAAGTCCTCTGACAACTAGACAACCAACCACCTCTACAGGTACTACAGAATCTAGTACACCCCCAACAAATACCACAACCTCTTCAACAGAAAGTTCCACGACGACCACAACGGCGGGTACTACCACTCCCTCTACTACCACCACACCAGCACCGGGAGGAGAACAAATGTCTAATTTAATGGCTCATATGATGAGTATGATGGCTCAAGGAAACGTTAATCAACCACCTGAACAGAGATATGCTACACAGTTAGAACAGATGGCTGCAATGGGTTTTATAGATAGAGAACAGAATCTGAGAGCTTTGACAGCGACACTTGGAAATGTTAATGATGCTATAGACAGAATTTTATCTAACAGCTGAGACTTGTTTAATCTAATCTTATTGTTCTGTGCATGCTTAATATTGTAATAAACTTTGGGATCAGTTTGTATCTTCATCAAACTAAATTAACACATTGGTATTATGCCACAGATCTAGTCCTAGGTCAAACTAAATTAAAACATTGGTCTAATACCACAGATCTAGTCCTAGGTGAAACTAAATTAAAACTATGTTCAATCTATAGAATATTATGAATCAATGAATATTACACAGACTTAATACTGTTGCTATACTTAATAAACTTATACTACATGTGCATTATTACACTCGTGTAAAAAGCAGCAGAATGATTTTTATTTTTATTTCTGTCATATTATCTTGTCACCACTCGGACTCTGAAACATCAAATTTCTTATTAAATTTCTCTGTCATCAGTAGGTCCAATAGTAAATACTGTATACAGTATTATTACAATCTCTGTCATCAATAGGTCCAATAGTAAATACTATATACAGTATTATTACAATCTCTGTCATCAGTAGGTCCAATATTAAATACTGTTTACAGTAATATTACAATCTCTGTCATCAGTAGTTAATACTGTTTACAGTAATATTACAATCTCTGTCATCAGTAGGTCCAATAGTAAATACTTTTTACAGTTTTATTTCAATCTTTGTCATCAGTAGGACCAATAATAAATACTGTAAACAGTAATATTACAATC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UBL\|NEDD8
Ubiquitin Family	UBD\|Alpha-Helix\|UBA
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan
PF00627	UBA	UBA/TS-N domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR006636	Domain	Heat shock chaperonin-binding	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR015496	Family	Ubiquilin	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10677	UBIQUILIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031593	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04523	UBQLN, DSK2; ubiquilin	-	Protein processing in endoplasmic reticulum	ko04141	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_10588-3.11 global RNA-seq network