Gene detail

Detailed information of Bpl_scaf_10298-1.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_10298-1.11	CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P	Bpl_scaf_10298	148976	164125	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_10298-1.11

ATGAAGAGGAAACGTAATTTGAAAAATAAGAACAAGGGAAAAGGACAAGATATGCCCGAACCATTACCAAAATCTGTGAATGTCAAAACTGATATCAAACTAAATGTGAAAAGGAAAAGTACAGGAGAAACCAGTGTTGCTAGTGATGAATCACATGAGCATTTTACAAGATCATCAGATATAGAAAAAAAGTGCAAAGAGAAAAATTTGCAAAAACAGAAAAATATTGATGAGGCAGGACCTAGCTTCTCAAATATTGTAACAAATAAAGCTGTCAAACGGAAACATGATACCAAAAGTGATGAACAAAGTTTTTGTACAAATTTCTGGGAAAAAAGTCAAGAAAAATATCAGAAAATAAGTGGAAGGAAAAAGAAAAAAAAGTCATCTGACTTTGATATTGAAGCAGATGAACAAATTGATCAACACATCGATAAACAAAATGACTCTGACAAGGTAGAAGGCAGTTCACAAAGCCACAATAGAAGGGCATCGAAAGGTCGAAAGAAAAAACATTCAAAAAGTAAAAGACAGAAATCAGGCAGTATCAATAAAGAAGACATTTCTGCTGATTTGTCCCTGGAATGGAATATGATCAACTTAAAAAGTGGAGTAATGCTAACAATGGAAAAGGGTACCGAAATTTGTTTCCATGGAAACTGTTGCCTGCTTCCACTTTGTGGATCCATTTCAGTTCTTGGCAGTCAACTAAGATGTGGAAAGAGTTATGACTTTTTCTCACCAGATACAAATAGTTTTTTAACAATAAAATGTGACGAGATAGAGACCAATTCTTCCATGGTTAAGAAAGTCTTCAACAAGGTTGAGCTGGATATCAGTCAACAAGGCAGCAATATAAAAGAAAAAAAGGTGGCCATCTTCAAAGTGAATTGCATAGAATCAAGATTAACTGACATTATTCCAAAATATCTACCATTTCAGCAGATTTTTAGGAGACAGGAAGATATCATTCATTTTCCTGAGTGGAAATTATCCCTATTTAAAGTTGGTTTGACTTTAAAGACCAGTGGAGCAAGAGTTTCTTTTCCTGATGATTATGATAAAATTAGGGACATGGCTCATGAATTAATAAAACAACAAAATAAAACTGATCCTCCACCTGTTTTGACTGTTGTTGGTGGGAAGAATTCTGGGAAGTCAACATTGAACAGATTTCTGGTTAATTCTATGCTGAATAAAGTTGATGCAGTCTACTTCCTAGAATGTGATGTTGGTCAGACTGAGTTTACTCCCCCTGGATGTGTGTCACTCCATTGTATCTCAGAACCAATTCTTGGGCCTCCATTTACTCATCAAAAGCCTGCAGTGTATTCCTGTTTCTTTGGAGGTGTAACACCATCAGATGACCCTTCAAGATACTTAACTTGTATTGAAGAGTGCTTCTCTAAATATCTAGAATTAGATCAGAAAATACCACTTATTGTAAATACTCTGGGCTGGAATAAAGGTGTGGGTCTAACATTGACAGTAGATACCATCAGATTGGTACACCCTTTACTACTAGTACAGATCAATACCAGGAAGAACATTGTCAATTTTCCTCCAATGCTCCCAAAATTTGTCAAGAAAGAACATGGATGGAGAGGAAAAATATGGGATGAAAAATGGAATTATATGTATGATATGCCAGAATATCAACTGTTTACATTAGATTCACCTGTAAATAGTAATGAAAGCCATATAGGTAGATACAGACCATCAGAACACAGAGATTTAACATTGTATAGTTACTTCAGCAGTGACCTTGAGTATGGAATGACCTTGACCTCAGTGACCCCTTACACAGTACCATGGAAGGATGTAGCTATTCATGTGTGTCATAAAACAGTAGAGAAGACACAAATCTTGTACAGTATCAATGGTAGTCTGGTAGCACTTTGTCAGGCTGATCTTACACACGCTGAGAGATACAATGATGAGACACCCTGGTTTTTTAGAGAAACACCAATATGCCAGTGCTTAGGGTTTGGATATGTTAGAGGAATTGATCCTATTAAGAAGCAGTTATTTATAGTAACACCTCTTACCTTAGAAGTGTTGGAGAATGTCAATACTTTGATAAAGGGAGTTGTTAATTTACCCAATCAGTTACTACTCAATCAGGTAGGATCAGAAGTATTAAGACAGAGACACCAGAAACCAAGGAAACAGACACCAGAATGA

Transcript

Bpl_scaf_10298-1.11

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16575	CLP1_P	mRNA cleavage and polyadenylation factor CLP1 P-loop	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032319	Domain	Polyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domain	Interproscan
IPR045116	Family	Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12755	CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000448	Biological Process	cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0051731	Molecular Function	polynucleotide 5'-hydroxyl-kinase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06947	GRC3, NOL9; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9	EC:2.7.1.-	Ribosome biogenesis	ko03009	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_10298-1.11 global RNA-seq network